Variant report
| Variant | rs59822024 |
|---|---|
| Chromosome Location | chr18:45228327-45228328 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000267187 | TF binding region |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs16955768 | 1.00[AMR][1000 genomes] |
| rs16956705 | 1.00[AMR][1000 genomes] |
| rs56037605 | 1.00[EUR][1000 genomes] |
| rs56370624 | 1.00[EUR][1000 genomes] |
| rs58548260 | 1.00[EUR][1000 genomes] |
| rs59260319 | 1.00[EUR][1000 genomes] |
| rs60000513 | 1.00[EUR][1000 genomes] |
| rs61151033 | 1.00[EUR][1000 genomes] |
| rs61226589 | 1.00[EUR][1000 genomes] |
| rs61448280 | 1.00[EUR][1000 genomes] |
| rs7226413 | 1.00[ASN][1000 genomes] |
| rs7227396 | 1.00[EUR][1000 genomes] |
| rs7234272 | 1.00[EUR][1000 genomes] |
| rs73439770 | 1.00[EUR][1000 genomes] |
| rs73439777 | 1.00[EUR][1000 genomes] |
| rs73439794 | 1.00[EUR][1000 genomes] |
| rs73956512 | 1.00[EUR][1000 genomes] |
| rs8085039 | 1.00[EUR][1000 genomes] |
| rs8091683 | 1.00[AMR][1000 genomes] |
| rs8093124 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3425854 | chr18:45188942-45336590 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv576823 | chr18:45207893-45264035 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:45226600-45228400 | Enhancers | Gastric | stomach |
