Variant report

Variant	rs59880344
Chromosome Location	chr1:155527986-155527987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155520429..155523505-chr1:155527684..155531607,4	K562	blood:
2	chr1:155526189..155529069-chr1:155532173..155534507,2	K562	blood:
3	chr1:155424741..155427653-chr1:155526371..155528510,2	K562	blood:

Variant related genes	Relation type
ENSG00000116539	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57956370	1.00[AFR][1000 genomes]
rs58516453	1.00[AFR][1000 genomes]
rs58624579	0.87[AFR][1000 genomes]
rs59074644	1.00[AFR][1000 genomes]
rs60745751	0.88[AFR][1000 genomes]
rs60791549	0.87[AFR][1000 genomes]
rs60839020	1.00[AFR][1000 genomes]
rs8177966	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	esv1799856	chr1:155305059-155534616	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1795662	chr1:155305059-155540660	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv872468	chr1:155413304-155549562	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
6	esv3431739	chr1:155514331-155664183	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155483400-155528600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:155489800-155529400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:155496600-155529800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:155506400-155529400	Weak transcription	Osteobl	bone
5	chr1:155506400-155529600	Weak transcription	Fetal Lung	lung
6	chr1:155507000-155530200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr1:155507400-155528000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:155510600-155530200	Weak transcription	Right Ventricle	heart
9	chr1:155510800-155528000	Weak transcription	Small Intestine	intestine
10	chr1:155510800-155528400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:155511000-155529200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr1:155511000-155529400	Weak transcription	HepG2	liver
13	chr1:155511400-155529800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr1:155511800-155528400	Weak transcription	Primary T cells from cord blood	blood
15	chr1:155514000-155529400	Weak transcription	Hela-S3	cervix
16	chr1:155514400-155528000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:155514400-155528400	Weak transcription	Left Ventricle	heart
18	chr1:155514400-155530200	Weak transcription	Pancreas	Pancrea
19	chr1:155514400-155530200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr1:155514400-155530200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr1:155516000-155530200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr1:155516800-155529600	Weak transcription	NHDF-Ad	bronchial
23	chr1:155517000-155531400	Weak transcription	Esophagus	oesophagus
24	chr1:155517400-155529600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:155517600-155530200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:155518200-155529400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:155518200-155531600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:155518600-155530000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr1:155518600-155531400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr1:155518800-155529400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr1:155518800-155529600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr1:155518800-155530000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr1:155518800-155530200	Weak transcription	Brain Substantia Nigra	brain
34	chr1:155518800-155530200	Weak transcription	HMEC	breast
35	chr1:155519000-155528200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr1:155519200-155528200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr1:155519200-155529400	Weak transcription	NHEK	skin
38	chr1:155519200-155529600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr1:155519200-155529800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr1:155519200-155530000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr1:155520000-155528000	Weak transcription	Ovary	ovary
42	chr1:155520200-155530200	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr1:155520800-155528200	Weak transcription	Colon Smooth Muscle	Colon
44	chr1:155520800-155528200	Weak transcription	Spleen	Spleen
45	chr1:155521000-155528000	Weak transcription	Psoas Muscle	Psoas
46	chr1:155522200-155531400	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr1:155522600-155529400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr1:155522600-155529400	Weak transcription	Brain Germinal Matrix	brain
49	chr1:155523200-155529000	Strong transcription	Fetal Thymus	thymus
50	chr1:155523400-155528600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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