Variant report

Variant	rs60839020
Chromosome Location	chr1:155544632-155544633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:155533882..155537625-chr1:155542886..155545221,3	MCF-7	breast:
2	chr1:155532819..155534394-chr1:155543476..155545822,2	K562	blood:

Variant related genes	Relation type
ENSG00000271267	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57956370	1.00[AFR][1000 genomes]
rs58516453	1.00[AFR][1000 genomes]
rs58624579	0.87[AFR][1000 genomes]
rs59074644	1.00[AFR][1000 genomes]
rs59880344	1.00[AFR][1000 genomes]
rs60745751	0.88[AFR][1000 genomes]
rs60791549	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	nsv872468	chr1:155413304-155549562	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	esv3431739	chr1:155514331-155664183	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv3388968	chr1:155532335-155658278	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155533400-155549000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:155534200-155547600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:155534600-155560400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:155534600-155565800	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:155534800-155544800	Weak transcription	Brain Anterior Caudate	brain
6	chr1:155534800-155558200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:155534800-155561800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:155534800-155565600	Weak transcription	Brain Angular Gyrus	brain
9	chr1:155534800-155568400	Weak transcription	Thymus	Thymus
10	chr1:155535000-155560000	Weak transcription	Right Ventricle	heart
11	chr1:155535000-155570400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:155535400-155564000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:155536000-155545200	Weak transcription	HMEC	breast
14	chr1:155537000-155544800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:155537000-155545000	Weak transcription	NHEK	skin
16	chr1:155538200-155560000	Weak transcription	Lung	lung
17	chr1:155540200-155544800	Weak transcription	GM12878-XiMat	blood
18	chr1:155540200-155547800	Weak transcription	Spleen	Spleen
19	chr1:155540400-155565800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr1:155540600-155545200	Weak transcription	Primary B cells from peripheral blood	blood
21	chr1:155541400-155545200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:155541400-155545400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr1:155541400-155546200	Weak transcription	Left Ventricle	heart
24	chr1:155541400-155560400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr1:155541400-155561800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr1:155541400-155569000	Weak transcription	HSMMtube	muscle
27	chr1:155541600-155549400	Weak transcription	Primary T cells from cord blood	blood
28	chr1:155541600-155553600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:155541600-155565600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr1:155541600-155565600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr1:155541600-155568400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr1:155541800-155560200	Weak transcription	Fetal Intestine Small	intestine
33	chr1:155542000-155545400	Weak transcription	HSMM	muscle
34	chr1:155542000-155546600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr1:155542000-155565600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr1:155542200-155545200	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr1:155542200-155562800	Weak transcription	Fetal Muscle Leg	muscle
38	chr1:155542400-155559800	Weak transcription	Fetal Stomach	stomach
39	chr1:155544600-155545200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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