Variant report

Variant	rs59882065
Chromosome Location	chr8:124949359-124949360
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10094501	0.90[ASN][1000 genomes]
rs10106438	1.00[ASN][1000 genomes]
rs17270331	0.90[ASN][1000 genomes]
rs60865882	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62518688	0.90[ASN][1000 genomes]
rs62518726	0.90[ASN][1000 genomes]
rs6998571	0.90[ASN][1000 genomes]
rs7018193	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033617	chr8:124895516-125012783	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1035035	chr8:124895516-125020472	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv612141	chr8:124895809-125006490	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv612142	chr8:124896389-125006490	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv612143	chr8:124927711-124988267	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020971	chr8:124939571-124973679	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124946800-124951800	Weak transcription	Right Ventricle	heart
2	chr8:124948400-124952000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:124948600-124949600	Weak transcription	Right Atrium	heart
4	chr8:124948600-124950200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:124948600-124950200	Weak transcription	Stomach Mucosa	stomach
6	chr8:124948600-124950400	Enhancers	Fetal Heart	heart
7	chr8:124948600-124951800	Weak transcription	Psoas Muscle	Psoas
8	chr8:124948600-124951800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr8:124948600-124952400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:124949000-124951200	Weak transcription	Fetal Muscle Leg	muscle
11	chr8:124949000-124951600	Weak transcription	HSMM	muscle
12	chr8:124949000-124952000	Weak transcription	K562	blood
13	chr8:124949200-124949400	Enhancers	Left Ventricle	heart
14	chr8:124949200-124951600	Weak transcription	HSMMtube	muscle
15	chr8:124949200-124952000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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