Variant report

Variant	rs60865882
Chromosome Location	chr8:124925345-124925346
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10094501	0.90[ASN][1000 genomes]
rs10106438	1.00[ASN][1000 genomes]
rs17270331	0.90[ASN][1000 genomes]
rs59882065	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62518688	0.90[ASN][1000 genomes]
rs62518726	0.90[ASN][1000 genomes]
rs6998571	0.90[ASN][1000 genomes]
rs7018193	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033617	chr8:124895516-125012783	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1035035	chr8:124895516-125020472	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv612141	chr8:124895809-125006490	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv612142	chr8:124896389-125006490	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124922800-124925800	Enhancers	Fetal Intestine Large	intestine
2	chr8:124923000-124927000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr8:124923200-124925400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:124923600-124926800	Enhancers	HSMMtube	muscle
5	chr8:124924000-124925400	Enhancers	Colonic Mucosa	Colon
6	chr8:124924200-124925800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:124924400-124926400	Weak transcription	HSMM	muscle
8	chr8:124924400-124926600	Weak transcription	Fetal Muscle Leg	muscle
9	chr8:124924600-124927000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr8:124924800-124926600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:124925000-124926800	Weak transcription	Fetal Intestine Small	intestine
12	chr8:124925200-124927400	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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