Variant report

Variant	rs59882453
Chromosome Location	chr2:47030996-47030997
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:46923592..46925257-chr2:47030948..47032802,2	MCF-7	breast:
2	chr2:47029275..47032064-chr2:47032266..47033892,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10495937	0.83[ASN][1000 genomes]
rs1446496	0.83[ASN][1000 genomes]
rs1446497	0.83[ASN][1000 genomes]
rs1446498	0.83[ASN][1000 genomes]
rs17035524	0.83[ASN][1000 genomes]
rs17771098	0.83[ASN][1000 genomes]
rs17771201	0.83[ASN][1000 genomes]
rs17771942	0.83[ASN][1000 genomes]
rs17773016	0.83[ASN][1000 genomes]
rs17823065	0.83[ASN][1000 genomes]
rs17823581	0.83[ASN][1000 genomes]
rs41453849	1.00[ASN][1000 genomes]
rs55928499	0.83[ASN][1000 genomes]
rs56060227	1.00[ASN][1000 genomes]
rs56199036	0.83[ASN][1000 genomes]
rs56800355	0.83[ASN][1000 genomes]
rs57124017	0.83[ASN][1000 genomes]
rs57420323	0.83[ASN][1000 genomes]
rs58200475	0.83[ASN][1000 genomes]
rs58362257	1.00[ASN][1000 genomes]
rs58509367	0.83[ASN][1000 genomes]
rs58903656	0.83[ASN][1000 genomes]
rs59186028	0.83[ASN][1000 genomes]
rs59785662	0.83[ASN][1000 genomes]
rs60506146	0.83[ASN][1000 genomes]
rs61075718	1.00[ASN][1000 genomes]
rs61654472	1.00[ASN][1000 genomes]
rs72802441	0.83[ASN][1000 genomes]
rs72802445	0.83[ASN][1000 genomes]
rs72802456	0.83[ASN][1000 genomes]
rs72802458	0.83[ASN][1000 genomes]
rs72802462	0.83[ASN][1000 genomes]
rs72802463	0.83[ASN][1000 genomes]
rs72802464	0.83[ASN][1000 genomes]
rs72802465	0.83[ASN][1000 genomes]
rs72802486	0.83[ASN][1000 genomes]
rs72802487	0.83[ASN][1000 genomes]
rs72802492	0.83[ASN][1000 genomes]
rs72802493	0.83[ASN][1000 genomes]
rs72802498	0.83[ASN][1000 genomes]
rs72802499	0.83[ASN][1000 genomes]
rs72802501	0.83[ASN][1000 genomes]
rs72802502	0.83[ASN][1000 genomes]
rs7566275	0.83[ASN][1000 genomes]
rs7578911	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014425	chr2:46670179-47033417	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv535678	chr2:46670179-47033417	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv873996	chr2:46670941-47065227	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv817517	chr2:46819371-47715140	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
5	nsv457352	chr2:47004788-47325973	Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv581749	chr2:47004788-47325973	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:47021400-47032600	Weak transcription	Pancreas	Pancrea
2	chr2:47022200-47031000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:47025000-47034600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:47026600-47038800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr2:47027200-47034800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:47027400-47031000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:47027400-47032400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:47027400-47034400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:47027600-47034400	Enhancers	HMEC	breast
10	chr2:47027800-47031200	Weak transcription	A549	lung
11	chr2:47027800-47031400	Enhancers	HSMMtube	muscle
12	chr2:47028000-47031400	Enhancers	Left Ventricle	heart
13	chr2:47028600-47031200	Weak transcription	Esophagus	oesophagus
14	chr2:47028600-47033000	Enhancers	HSMM	muscle
15	chr2:47028600-47034400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr2:47028600-47034400	Enhancers	NH-A	brain
17	chr2:47028800-47034400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:47029000-47031200	Enhancers	Right Ventricle	heart
19	chr2:47029000-47034400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr2:47029200-47031000	Enhancers	NHEK	skin
21	chr2:47029200-47031400	Enhancers	Right Atrium	heart
22	chr2:47029400-47031400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr2:47029400-47034400	Enhancers	NHLF	lung
24	chr2:47029600-47031000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr2:47029800-47031000	Enhancers	Fetal Heart	heart
26	chr2:47029800-47031000	Weak transcription	Lung	lung
27	chr2:47029800-47031200	Weak transcription	Spleen	Spleen
28	chr2:47029800-47034000	Weak transcription	Aorta	Aorta
29	chr2:47030000-47031200	Enhancers	Osteobl	bone
30	chr2:47030000-47038600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr2:47030200-47031000	Genic enhancers	NHDF-Ad	bronchial
32	chr2:47030400-47031600	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr2:47030600-47031400	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr2:47030800-47031400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr2:47030800-47034200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr2:47030800-47035200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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