Variant report

Variant	rs59893612
Chromosome Location	chr15:92677376-92677377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11853311	0.93[ASN][1000 genomes]
rs2387685	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1804399	chr15:92669184-92677517	Weak transcription Genic enhancers Strong transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	esv3311556	chr15:92673248-92678346	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	diseases
3	esv3444406	chr15:92673448-92678246	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
4	esv3325168	chr15:92673898-92678096	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3311560	chr15:92674104-92677388	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	diseases
6	nsv819109	chr15:92674111-92677451	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	diseases
7	esv996042	chr15:92674359-92677641	Strong transcription Weak transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv570486	chr15:92675217-92677444	Strong transcription Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv1813436	chr15:92675217-92677517	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv1837424	chr15:92675217-92677517	Strong transcription Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv1837787	chr15:92675217-92677517	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv1842259	chr15:92675217-92677517	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	nsv570499	chr15:92675751-92677444	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92645000-92679800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr15:92648200-92692600	Weak transcription	NHLF	lung
4	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:92657000-92690200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:92660600-92678600	Weak transcription	Thymus	Thymus
7	chr15:92661000-92703600	Weak transcription	Small Intestine	intestine
8	chr15:92663400-92677600	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr15:92663400-92679200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr15:92663400-92679400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr15:92664000-92707000	Weak transcription	Liver	Liver
12	chr15:92664000-92712000	Weak transcription	Psoas Muscle	Psoas
13	chr15:92665200-92689000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:92665800-92682400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr15:92665800-92686000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:92666000-92685600	Weak transcription	Fetal Muscle Leg	muscle
17	chr15:92666000-92704200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr15:92667200-92679200	Strong transcription	Lung	lung
19	chr15:92668200-92678400	Weak transcription	Fetal Heart	heart
20	chr15:92668200-92690200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:92668600-92690800	Weak transcription	Brain Angular Gyrus	brain
22	chr15:92669200-92677400	Strong transcription	Adipose Nuclei	Adipose
23	chr15:92669600-92703000	Weak transcription	Brain Anterior Caudate	brain
24	chr15:92670400-92677400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:92671200-92678400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:92671600-92708000	Weak transcription	Gastric	stomach
27	chr15:92671800-92707800	Weak transcription	Colonic Mucosa	Colon
28	chr15:92671800-92709200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr15:92672000-92704200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr15:92672200-92685400	Weak transcription	Brain Hippocampus Middle	brain
31	chr15:92672200-92695600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr15:92672200-92703200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:92672400-92689600	Weak transcription	Fetal Stomach	stomach
34	chr15:92672600-92678200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr15:92672600-92690200	Weak transcription	Spleen	Spleen
36	chr15:92672600-92691200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:92672800-92678400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr15:92672800-92687000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:92672800-92687200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr15:92673400-92692600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:92673800-92678200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr15:92673800-92678400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr15:92674000-92678200	Weak transcription	Right Ventricle	heart
44	chr15:92674000-92685400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr15:92674000-92685600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr15:92674000-92687000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr15:92674000-92690000	Weak transcription	Stomach Smooth Muscle	stomach
48	chr15:92674200-92684200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:92674400-92678200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr15:92674400-92678800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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