Variant report

Variant	rs59900803
Chromosome Location	chr4:62262070-62262071
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11930313	0.86[ASN][1000 genomes]
rs11945614	0.84[ASN][1000 genomes]
rs13107100	0.86[ASN][1000 genomes]
rs13127162	0.87[ASN][1000 genomes]
rs13146204	0.86[ASN][1000 genomes]
rs1379165	0.86[ASN][1000 genomes]
rs1840775	0.88[ASN][1000 genomes]
rs28458360	0.86[ASN][1000 genomes]
rs9654272	0.88[ASN][1000 genomes]
rs9994169	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461376	chr4:62187646-62274626	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv594327	chr4:62187646-62274626	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv868844	chr4:62241702-62497248	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879076	chr4:62251077-62354791	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62247600-62262200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:62251200-62263000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:62251200-62266200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:62254600-62273400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:62255200-62263000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:62255600-62266200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:62256400-62263000	Weak transcription	Brain Substantia Nigra	brain
8	chr4:62258600-62266600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:62259400-62266600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:62260000-62263800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr4:62260400-62266600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:62260800-62263400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:62260800-62264600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:62261200-62264200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:62261200-62266200	Weak transcription	Brain Hippocampus Middle	brain
16	chr4:62261600-62262600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:62261800-62263000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:62262000-62262200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr4:62262000-62266600	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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