Variant report

Variant	rs59902979
Chromosome Location	chr16:73210529-73210530
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:73105729..73106412-chr16:73209983..73210731,2	MCF-7	breast:
2	chr16:73078887..73105658-chr16:73199970..73218820,70	MCF-7	breast:
3	chr16:73209415..73211183-chr16:73222287..73224884,2	MCF-7	breast:
4	chr16:72871006..72871589-chr16:73210191..73210967,2	MCF-7	breast:
5	chr16:73205501..73207948-chr16:73208776..73211148,2	K562	blood:
6	chr16:73208917..73212047-chr16:73228370..73232042,3	MCF-7	breast:
7	chr16:73207631..73210012-chr16:73210032..73212165,2	MCF-7	breast:
8	chr16:73104085..73104606-chr16:73210322..73211086,2	MCF-7	breast:
9	chr16:72946292..72948542-chr16:73210284..73212179,2	MCF-7	breast:
10	chr16:73085808..73105797-chr16:73200813..73215550,44	MCF-7	breast:
11	chr16:73210313..73214304-chr16:73219453..73221314,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000271009	Chromatin interaction
ENSG00000272250	Chromatin interaction
ENSG00000140836	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13330336	1.00[AMR][1000 genomes]
rs13332183	1.00[AMR][1000 genomes]
rs28594767	1.00[AMR][1000 genomes]
rs7189909	1.00[AMR][1000 genomes]
rs74028076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74028077	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74028078	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869180	chr16:73189128-73726612	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73201400-73210600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr16:73207800-73213200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:73208000-73212600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr16:73208000-73217600	Weak transcription	Colon Smooth Muscle	Colon
5	chr16:73208200-73217400	Weak transcription	Ovary	ovary
6	chr16:73208400-73217400	Weak transcription	Placenta	Placenta
7	chr16:73208600-73211800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr16:73208600-73213000	Weak transcription	Fetal Lung	lung
9	chr16:73208600-73213400	Weak transcription	Fetal Muscle Leg	muscle
10	chr16:73208600-73213600	Weak transcription	Gastric	stomach
11	chr16:73208600-73213600	Weak transcription	NHLF	lung
12	chr16:73208600-73213800	Weak transcription	Fetal Kidney	kidney
13	chr16:73208600-73213800	Weak transcription	Fetal Stomach	stomach
14	chr16:73208600-73217200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr16:73209200-73211800	Enhancers	Hela-S3	cervix
16	chr16:73210200-73210600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr16:73210200-73210600	Enhancers	NHEK	skin
18	chr16:73210200-73211000	Enhancers	Osteobl	bone
19	chr16:73210200-73211200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr16:73210200-73211200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr16:73210400-73210600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr16:73210400-73211200	Enhancers	Muscle Satellite Cultured Cells	--

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