Variant report

Variant	rs59904447
Chromosome Location	chr2:177712181-177712182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:14319600..14320215-chr2:177711761..177712521,2	MCF-7	breast:
2	chr2:177710576..177713068-chr2:177724579..177727566,2	MCF-7	breast:
3	chr2:177711466..177713806-chr2:177714846..177717263,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11694439	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13003981	1.00[ASN][1000 genomes]
rs1581144	1.00[ASN][1000 genomes]
rs1581145	1.00[ASN][1000 genomes]
rs16864568	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16864578	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16864579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16864580	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16864582	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16864584	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16864585	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16864586	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16864592	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866131	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866132	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866133	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4021388	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4893919	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894203	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894204	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894205	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894206	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55885993	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56938233	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433617	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6713010	1.00[ASN][1000 genomes]
rs6728420	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751647	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751796	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6757494	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73975504	0.91[EUR][1000 genomes]
rs73975550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565265	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7592612	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7606316	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459953	chr2:177704321-177720675	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv583687	chr2:177704321-177720675	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177710000-177716800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr2:177710600-177716000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr2:177710800-177715000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr2:177710800-177716600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:177711400-177715800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr2:177711600-177713800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr2:177711800-177712200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr2:177711800-177712600	Enhancers	HUES6 Cell Line	embryonic stem cell

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