Variant report

Variant	rs13003981
Chromosome Location	chr2:177723314-177723315
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:177721738..177724544-chr2:177730328..177733547,3	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10497471	0.86[EUR][1000 genomes]
rs11694439	1.00[ASN][1000 genomes]
rs11883773	0.86[EUR][1000 genomes]
rs11883984	0.86[EUR][1000 genomes]
rs11887083	0.86[EUR][1000 genomes]
rs11900453	0.86[EUR][1000 genomes]
rs11900702	0.86[EUR][1000 genomes]
rs11900899	0.86[EUR][1000 genomes]
rs1358294	0.86[EUR][1000 genomes]
rs1529085	0.86[EUR][1000 genomes]
rs1581144	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1581145	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16864568	1.00[ASN][1000 genomes]
rs16864578	1.00[ASN][1000 genomes]
rs16864579	1.00[ASN][1000 genomes]
rs16864580	1.00[ASN][1000 genomes]
rs16864582	1.00[ASN][1000 genomes]
rs16864584	1.00[ASN][1000 genomes]
rs16864585	1.00[ASN][1000 genomes]
rs16864586	1.00[ASN][1000 genomes]
rs16864592	1.00[ASN][1000 genomes]
rs16864639	0.86[EUR][1000 genomes]
rs16864653	0.86[EUR][1000 genomes]
rs16864656	0.86[EUR][1000 genomes]
rs16864661	0.86[EUR][1000 genomes]
rs16864693	0.86[EUR][1000 genomes]
rs16864700	0.86[EUR][1000 genomes]
rs16864711	0.86[EUR][1000 genomes]
rs16864728	0.86[EUR][1000 genomes]
rs1866131	1.00[ASN][1000 genomes]
rs1866132	1.00[ASN][1000 genomes]
rs1866133	1.00[ASN][1000 genomes]
rs4021388	1.00[ASN][1000 genomes]
rs4893919	1.00[ASN][1000 genomes]
rs4894203	1.00[ASN][1000 genomes]
rs4894204	1.00[ASN][1000 genomes]
rs4894205	1.00[ASN][1000 genomes]
rs4894206	1.00[ASN][1000 genomes]
rs55885993	1.00[ASN][1000 genomes]
rs56938233	1.00[ASN][1000 genomes]
rs57398349	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58712667	0.86[EUR][1000 genomes]
rs59904447	1.00[ASN][1000 genomes]
rs6433617	1.00[ASN][1000 genomes]
rs6705984	0.80[EUR][1000 genomes]
rs6709423	0.86[EUR][1000 genomes]
rs6713010	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6724100	0.86[EUR][1000 genomes]
rs6728420	1.00[ASN][1000 genomes]
rs6732706	0.86[EUR][1000 genomes]
rs6740670	0.86[EUR][1000 genomes]
rs6751647	1.00[ASN][1000 genomes]
rs6751796	1.00[ASN][1000 genomes]
rs6757388	0.86[EUR][1000 genomes]
rs6757494	1.00[ASN][1000 genomes]
rs6759227	0.86[EUR][1000 genomes]
rs73026248	0.86[EUR][1000 genomes]
rs73028294	0.86[EUR][1000 genomes]
rs73035083	0.86[EUR][1000 genomes]
rs73975550	1.00[ASN][1000 genomes]
rs7565265	1.00[ASN][1000 genomes]
rs7592612	1.00[ASN][1000 genomes]
rs7606316	1.00[ASN][1000 genomes]
rs874134	0.86[EUR][1000 genomes]
rs874135	0.86[EUR][1000 genomes]
rs874136	0.86[EUR][1000 genomes]
rs874416	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3050	chr2:177713430-177760533	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177719000-177724400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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