Variant report

Variant	rs16864661
Chromosome Location	chr2:177757596-177757597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10497471	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11883773	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11883984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11887083	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11900453	1.00[EUR][1000 genomes]
rs11900702	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11900899	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13003981	0.86[EUR][1000 genomes]
rs1358294	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1529085	1.00[EUR][1000 genomes]
rs1581144	0.86[EUR][1000 genomes]
rs1581145	0.86[EUR][1000 genomes]
rs16864639	1.00[EUR][1000 genomes]
rs16864653	1.00[EUR][1000 genomes]
rs16864656	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16864693	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16864700	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16864711	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16864728	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57398349	1.00[EUR][1000 genomes]
rs58712667	1.00[EUR][1000 genomes]
rs6705984	0.93[EUR][1000 genomes]
rs6709423	1.00[EUR][1000 genomes]
rs6713010	0.86[EUR][1000 genomes]
rs6724100	1.00[EUR][1000 genomes]
rs6732706	1.00[EUR][1000 genomes]
rs6740670	1.00[EUR][1000 genomes]
rs6757388	1.00[EUR][1000 genomes]
rs6759227	1.00[EUR][1000 genomes]
rs73026248	1.00[EUR][1000 genomes]
rs73028294	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73035083	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs874134	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs874135	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs874136	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs874416	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3050	chr2:177713430-177760533	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177751200-177758600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:177756600-177757600	Active TSS	Fetal Brain Female	brain
3	chr2:177757200-177757600	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr2:177757400-177757600	Enhancers	Fetal Brain Male	brain
5	chr2:177757400-177757800	Enhancers	Brain Anterior Caudate	brain

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