Variant report
| Variant | rs16864639 |
|---|---|
| Chromosome Location | chr2:177745111-177745112 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10497471 | 1.00[EUR][1000 genomes] |
| rs11883773 | 1.00[EUR][1000 genomes] |
| rs11883984 | 1.00[EUR][1000 genomes] |
| rs11887083 | 1.00[EUR][1000 genomes] |
| rs11900453 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11900702 | 1.00[EUR][1000 genomes] |
| rs11900899 | 1.00[EUR][1000 genomes] |
| rs13003981 | 0.86[EUR][1000 genomes] |
| rs1358294 | 1.00[EUR][1000 genomes] |
| rs1529085 | 1.00[EUR][1000 genomes] |
| rs1581144 | 0.86[EUR][1000 genomes] |
| rs1581145 | 0.86[EUR][1000 genomes] |
| rs16864653 | 1.00[EUR][1000 genomes] |
| rs16864656 | 1.00[EUR][1000 genomes] |
| rs16864661 | 1.00[EUR][1000 genomes] |
| rs16864693 | 1.00[EUR][1000 genomes] |
| rs16864700 | 1.00[EUR][1000 genomes] |
| rs16864711 | 1.00[EUR][1000 genomes] |
| rs16864728 | 1.00[EUR][1000 genomes] |
| rs57398349 | 1.00[EUR][1000 genomes] |
| rs58712667 | 1.00[EUR][1000 genomes] |
| rs6705984 | 0.93[EUR][1000 genomes] |
| rs6709423 | 1.00[EUR][1000 genomes] |
| rs6713010 | 0.86[EUR][1000 genomes] |
| rs6724100 | 1.00[EUR][1000 genomes] |
| rs6732706 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs6740670 | 1.00[CEU][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6757388 | 1.00[EUR][1000 genomes] |
| rs6759227 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73026248 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73028294 | 1.00[EUR][1000 genomes] |
| rs73035083 | 1.00[EUR][1000 genomes] |
| rs7588073 | 0.86[LWK][hapmap] |
| rs874134 | 1.00[EUR][1000 genomes] |
| rs874135 | 1.00[EUR][1000 genomes] |
| rs874136 | 1.00[EUR][1000 genomes] |
| rs874416 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv3050 | chr2:177713430-177760533 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs16864639 | CXCL11 | trans | brain | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:177744000-177745400 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chr2:177744400-177745400 | Enhancers | Colon Smooth Muscle | Colon |
