Variant report

Variant	rs11900453
Chromosome Location	chr2:177720874-177720875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10497471	1.00[EUR][1000 genomes]
rs11883773	1.00[EUR][1000 genomes]
rs11883984	1.00[EUR][1000 genomes]
rs11887083	1.00[EUR][1000 genomes]
rs11900702	1.00[EUR][1000 genomes]
rs11900899	1.00[EUR][1000 genomes]
rs13003981	0.86[EUR][1000 genomes]
rs1358294	1.00[EUR][1000 genomes]
rs1529085	1.00[EUR][1000 genomes]
rs1581144	0.86[EUR][1000 genomes]
rs1581145	0.86[EUR][1000 genomes]
rs16864598	0.83[AFR][1000 genomes]
rs16864639	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16864653	1.00[EUR][1000 genomes]
rs16864656	1.00[EUR][1000 genomes]
rs16864661	1.00[EUR][1000 genomes]
rs16864693	1.00[EUR][1000 genomes]
rs16864700	1.00[EUR][1000 genomes]
rs16864711	1.00[EUR][1000 genomes]
rs16864728	1.00[EUR][1000 genomes]
rs57398349	1.00[EUR][1000 genomes]
rs58712667	1.00[EUR][1000 genomes]
rs6705984	0.93[EUR][1000 genomes]
rs6709423	1.00[EUR][1000 genomes]
rs6713010	0.86[EUR][1000 genomes]
rs6724100	1.00[EUR][1000 genomes]
rs6732706	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6740670	1.00[CEU][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6757388	1.00[EUR][1000 genomes]
rs6759227	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73026248	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73028294	1.00[EUR][1000 genomes]
rs73035083	1.00[EUR][1000 genomes]
rs7588073	0.90[LWK][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes]
rs874134	1.00[EUR][1000 genomes]
rs874135	1.00[EUR][1000 genomes]
rs874136	1.00[EUR][1000 genomes]
rs874416	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3050	chr2:177713430-177760533	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177715800-177722800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr2:177716200-177722400	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr2:177716600-177722200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr2:177716600-177722600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr2:177716600-177722600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr2:177716600-177722800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr2:177716800-177721400	Weak transcription	Fetal Kidney	kidney
8	chr2:177717800-177721000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr2:177717800-177722400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr2:177718800-177722600	Weak transcription	Small Intestine	intestine
11	chr2:177719000-177721400	Weak transcription	Primary T cells from cord blood	blood
12	chr2:177719000-177724400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr2:177719600-177722200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr2:177719800-177722800	Enhancers	Fetal Thymus	thymus
15	chr2:177719800-177722800	Enhancers	Thymus	Thymus
16	chr2:177720200-177721400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr2:177720200-177722400	Enhancers	Primary T cells fromperipheralblood	blood
18	chr2:177720400-177721400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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