Variant report

Variant	rs6732706
Chromosome Location	chr2:177798070-177798071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10497471	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11883773	1.00[EUR][1000 genomes]
rs11883984	1.00[EUR][1000 genomes]
rs11887083	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11900453	1.00[EUR][1000 genomes]
rs11900702	1.00[EUR][1000 genomes]
rs11900899	1.00[EUR][1000 genomes]
rs13003981	0.86[EUR][1000 genomes]
rs1358294	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1529085	1.00[EUR][1000 genomes]
rs1581144	0.86[EUR][1000 genomes]
rs1581145	0.86[EUR][1000 genomes]
rs16864639	1.00[EUR][1000 genomes]
rs16864653	1.00[EUR][1000 genomes]
rs16864656	1.00[EUR][1000 genomes]
rs16864661	1.00[EUR][1000 genomes]
rs16864693	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16864700	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16864711	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16864728	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57398349	1.00[EUR][1000 genomes]
rs58712667	1.00[EUR][1000 genomes]
rs6705984	0.93[EUR][1000 genomes]
rs6709423	1.00[EUR][1000 genomes]
rs6713010	0.86[EUR][1000 genomes]
rs6724100	1.00[EUR][1000 genomes]
rs6740670	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6757388	1.00[EUR][1000 genomes]
rs6759227	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73026248	1.00[EUR][1000 genomes]
rs73028294	1.00[EUR][1000 genomes]
rs73035083	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs874134	1.00[EUR][1000 genomes]
rs874135	1.00[EUR][1000 genomes]
rs874136	1.00[EUR][1000 genomes]
rs874416	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875448	chr2:177760005-177819108	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv875449	chr2:177775612-177835010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv875450	chr2:177785155-177819108	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177796200-177798200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr2:177797000-177799000	Weak transcription	K562	blood
3	chr2:177797000-177799200	Weak transcription	Fetal Heart	heart
4	chr2:177797000-177800800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:177797200-177798200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr2:177797200-177799600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr2:177797400-177798800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr2:177798000-177800200	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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