Variant report

Variant	rs59909949
Chromosome Location	chr10:50160164-50160165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56045103	1.00[AMR][1000 genomes]
rs61733226	1.00[AMR][1000 genomes]
rs74130416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74130417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74130420	1.00[AMR][1000 genomes]
rs74130468	1.00[AMR][1000 genomes]
rs74130478	1.00[AMR][1000 genomes]
rs74130482	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50134600-50160400	Weak transcription	Right Atrium	heart
2	chr10:50143600-50164400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:50144600-50196200	Strong transcription	Primary B cells from cord blood	blood
4	chr10:50145000-50193200	Strong transcription	Primary B cells from peripheral blood	blood
5	chr10:50145400-50193200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:50145800-50193400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:50148000-50193600	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:50149600-50161200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr10:50153400-50187800	Strong transcription	GM12878-XiMat	blood
10	chr10:50153600-50193600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr10:50154600-50160400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:50154600-50162000	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:50154800-50165800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:50157400-50166000	Weak transcription	Primary T cells from cord blood	blood
15	chr10:50158400-50161200	Enhancers	Fetal Muscle Leg	muscle
16	chr10:50158800-50161400	Strong transcription	Spleen	Spleen
17	chr10:50159000-50160800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:50159200-50160800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:50159800-50160200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:50159800-50160400	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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