Variant report

Variant	rs74130468
Chromosome Location	chr10:50267642-50267643
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50261106..50262953-chr10:50265255..50267804,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56045103	1.00[AMR][1000 genomes]
rs59909949	1.00[AMR][1000 genomes]
rs61733226	1.00[AMR][1000 genomes]
rs74130416	1.00[AMR][1000 genomes]
rs74130417	1.00[AMR][1000 genomes]
rs74130420	1.00[AMR][1000 genomes]
rs74130478	1.00[AMR][1000 genomes]
rs74130482	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:50232400-50279200	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:50243800-50278800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:50247000-50282600	Weak transcription	Brain Angular Gyrus	brain
5	chr10:50247800-50271600	Weak transcription	Fetal Intestine Small	intestine
6	chr10:50254400-50278800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:50255800-50270200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:50260600-50267800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr10:50262800-50271600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:50263400-50272200	Weak transcription	Fetal Brain Male	brain
11	chr10:50264800-50271800	Weak transcription	NHDF-Ad	bronchial
12	chr10:50265400-50267800	Enhancers	Right Atrium	heart
13	chr10:50266000-50271800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:50266400-50271600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:50266600-50289400	Weak transcription	Colonic Mucosa	Colon
16	chr10:50266800-50278600	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:50267000-50269600	Strong transcription	Fetal Lung	lung
18	chr10:50267000-50271600	Weak transcription	HSMMtube	muscle
19	chr10:50267200-50268000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:50267200-50270000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:50267200-50288400	Weak transcription	NHLF	lung
22	chr10:50267400-50268000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:50267400-50271600	Weak transcription	Aorta	Aorta
24	chr10:50267400-50271800	Weak transcription	Right Ventricle	heart
25	chr10:50267600-50267800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr10:50267600-50268200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr10:50267600-50268400	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:50267600-50271000	Weak transcription	Fetal Stomach	stomach
29	chr10:50267600-50271200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:50267600-50271600	Weak transcription	Ovary	ovary
31	chr10:50267600-50276400	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links