Variant report

Variant	rs59914222
Chromosome Location	chr3:51027351-51027352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12185906	0.87[AFR][1000 genomes]
rs13062018	0.87[AFR][1000 genomes]
rs13064199	0.87[AFR][1000 genomes]
rs13085827	0.87[AFR][1000 genomes]
rs13086922	0.87[AFR][1000 genomes]
rs13093289	0.87[AFR][1000 genomes]
rs34002537	0.87[AFR][1000 genomes]
rs34040634	0.87[AFR][1000 genomes]
rs34481683	0.87[AFR][1000 genomes]
rs34836308	0.87[AFR][1000 genomes]
rs35273485	0.87[AFR][1000 genomes]
rs35481031	0.87[AFR][1000 genomes]
rs35693100	0.87[AFR][1000 genomes]
rs35875816	0.87[AFR][1000 genomes]
rs36056105	0.87[AFR][1000 genomes]
rs55785224	0.87[AFR][1000 genomes]
rs56337038	1.00[AMR][1000 genomes]
rs56837922	1.00[AMR][1000 genomes]
rs57378417	0.87[AFR][1000 genomes]
rs57642230	0.87[AFR][1000 genomes]
rs59769351	1.00[AMR][1000 genomes]
rs60292376	0.87[AFR][1000 genomes]
rs61146736	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61638760	0.87[AFR][1000 genomes]
rs66792086	0.93[AFR][1000 genomes]
rs67445615	0.87[AFR][1000 genomes]
rs6763779	0.93[AFR][1000 genomes]
rs6771085	0.87[AFR][1000 genomes]
rs7426759	0.87[AFR][1000 genomes]
rs7429035	0.87[AFR][1000 genomes]
rs7629809	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1004881	chr3:50900793-51032918	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536568	chr3:50900793-51032918	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51021600-51028000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:51027000-51027400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:51027000-51030600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links