Variant report

Variant	rs59927802
Chromosome Location	chr8:10282876-10282877
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:10277398..10280414-chr8:10281254..10284079,3	K562	blood:
2	chr8:9898874..9899812-chr8:10282419..10282930,2	K562	blood:
3	chr8:10281970..10284229-chr8:10318464..10320467,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP1L1-8	chr8:10281418-10284043	NONHSAT124985

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs57168556	1.00[AMR][1000 genomes]
rs57261078	1.00[AMR][1000 genomes]
rs57263343	1.00[AMR][1000 genomes]
rs57408304	1.00[AMR][1000 genomes]
rs57875176	1.00[AMR][1000 genomes]
rs58522736	1.00[AMR][1000 genomes]
rs60330012	1.00[AMR][1000 genomes]
rs60870305	1.00[AMR][1000 genomes]
rs6422367	1.00[AMR][1000 genomes]
rs6983653	1.00[AMR][1000 genomes]
rs6989210	1.00[AMR][1000 genomes]
rs7010878	1.00[AMR][1000 genomes]
rs73542119	1.00[AMR][1000 genomes]
rs73542120	1.00[AMR][1000 genomes]
rs73542122	1.00[AMR][1000 genomes]
rs73542129	1.00[AMR][1000 genomes]
rs73542132	1.00[AMR][1000 genomes]
rs73542133	1.00[AMR][1000 genomes]
rs73542143	1.00[AMR][1000 genomes]
rs73542148	1.00[AMR][1000 genomes]
rs73542153	1.00[AMR][1000 genomes]
rs73542155	1.00[AMR][1000 genomes]
rs73544151	1.00[AMR][1000 genomes]
rs73544157	1.00[AMR][1000 genomes]
rs73544165	1.00[AMR][1000 genomes]
rs73544166	1.00[AMR][1000 genomes]
rs73662834	1.00[AMR][1000 genomes]
rs7814061	1.00[AMR][1000 genomes]
rs7839017	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv527326	chr8:10199548-10320019	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv465460	chr8:10241411-10290566	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv610265	chr8:10241411-10290566	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv610266	chr8:10250758-10294330	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv890348	chr8:10265712-10289663	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv610267	chr8:10268736-10526742	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10263600-10283400	Weak transcription	Fetal Intestine Small	intestine
2	chr8:10276000-10283800	Weak transcription	Psoas Muscle	Psoas
3	chr8:10276000-10290400	Weak transcription	Fetal Intestine Large	intestine
4	chr8:10276000-10293600	Weak transcription	Brain Substantia Nigra	brain
5	chr8:10276200-10283800	Weak transcription	Liver	Liver
6	chr8:10281000-10287200	Enhancers	Fetal Brain Male	brain
7	chr8:10281400-10284600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:10281800-10285000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:10282000-10283000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr8:10282200-10283000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr8:10282200-10283000	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr8:10282200-10283000	Enhancers	Fetal Stomach	stomach
13	chr8:10282200-10283400	Enhancers	Fetal Thymus	thymus
14	chr8:10282200-10283800	Enhancers	Fetal Lung	lung
15	chr8:10282200-10285400	Enhancers	Brain Angular Gyrus	brain
16	chr8:10282200-10285400	Enhancers	Fetal Muscle Leg	muscle
17	chr8:10282400-10283000	Enhancers	Primary B cells from peripheral blood	blood
18	chr8:10282400-10283000	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr8:10282400-10283000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr8:10282400-10283000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr8:10282400-10283000	Enhancers	Colon Smooth Muscle	Colon
22	chr8:10282400-10283000	Enhancers	Pancreas	Pancrea
23	chr8:10282400-10283200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:10282400-10283200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:10282400-10283200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:10282400-10283200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr8:10282400-10283200	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr8:10282400-10283200	Enhancers	Primary T cells fromperipheralblood	blood
29	chr8:10282400-10283200	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr8:10282400-10283200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr8:10282400-10283200	Enhancers	Right Ventricle	heart
32	chr8:10282400-10283400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr8:10282400-10283600	Genic enhancers	Spleen	Spleen
34	chr8:10282400-10283800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr8:10282400-10284400	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr8:10282400-10284800	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr8:10282400-10285600	Enhancers	Brain Cingulate Gyrus	brain
38	chr8:10282600-10283000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr8:10282600-10283000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr8:10282600-10283000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr8:10282600-10283000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr8:10282600-10283000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr8:10282600-10283000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr8:10282600-10283000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr8:10282600-10283000	Enhancers	Brain Anterior Caudate	brain
46	chr8:10282600-10283000	Flanking Active TSS	Brain Germinal Matrix	brain
47	chr8:10282600-10283000	Weak transcription	Gastric	stomach
48	chr8:10282600-10283000	Enhancers	Thymus	Thymus
49	chr8:10282600-10283200	Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chr8:10282600-10283200	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links