Variant report
| Variant | rs59931211 |
|---|---|
| Chromosome Location | chr8:62169051-62169052 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10088692 | 0.88[ASN][1000 genomes] |
| rs10088723 | 0.88[ASN][1000 genomes] |
| rs10088806 | 0.88[ASN][1000 genomes] |
| rs10110755 | 0.90[ASN][1000 genomes] |
| rs10110877 | 0.90[ASN][1000 genomes] |
| rs10111158 | 0.90[ASN][1000 genomes] |
| rs1486649 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1486650 | 0.88[ASN][1000 genomes] |
| rs1486651 | 0.88[ASN][1000 genomes] |
| rs16927058 | 0.88[ASN][1000 genomes] |
| rs16927069 | 0.90[ASN][1000 genomes] |
| rs16927076 | 0.90[ASN][1000 genomes] |
| rs56300577 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs58784874 | 0.90[ASN][1000 genomes] |
| rs6471944 | 0.88[ASN][1000 genomes] |
| rs67642236 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs68075107 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7017480 | 0.88[ASN][1000 genomes] |
| rs7828493 | 0.88[ASN][1000 genomes] |
| rs7834956 | 0.90[ASN][1000 genomes] |
| rs7844862 | 0.88[ASN][1000 genomes] |
| rs9643526 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948922 | chr8:61818964-62475097 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv465698 | chr8:62036793-62179465 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv611426 | chr8:62036793-62179465 | Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1024432 | chr8:62086247-62898782 | Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:62167600-62172400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr8:62168400-62172000 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
