Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:95064221..95064952-chr8:62154095..62154615,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000105854	Chromatin interaction

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10088692	0.98[ASN][1000 genomes]
rs10088723	0.98[ASN][1000 genomes]
rs10088806	0.98[ASN][1000 genomes]
rs10110755	1.00[ASN][1000 genomes]
rs10110877	1.00[ASN][1000 genomes]
rs10111158	1.00[ASN][1000 genomes]
rs1471859	0.82[ASN][1000 genomes]
rs1486649	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1486650	0.98[ASN][1000 genomes]
rs1486651	0.98[ASN][1000 genomes]
rs1599915	0.82[ASN][1000 genomes]
rs16927058	0.98[ASN][1000 genomes]
rs16927069	1.00[ASN][1000 genomes]
rs16927076	1.00[ASN][1000 genomes]
rs2919324	0.84[ASN][1000 genomes]
rs2931347	0.81[ASN][1000 genomes]
rs2931348	0.81[ASN][1000 genomes]
rs2931349	0.81[ASN][1000 genomes]
rs2931350	0.80[ASN][1000 genomes]
rs2931352	0.82[ASN][1000 genomes]
rs2978546	0.81[ASN][1000 genomes]
rs2978549	0.82[ASN][1000 genomes]
rs56300577	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58784874	1.00[ASN][1000 genomes]
rs59931211	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6471944	0.98[ASN][1000 genomes]
rs67642236	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017480	0.98[ASN][1000 genomes]
rs7828493	0.98[ASN][1000 genomes]
rs7834956	1.00[ASN][1000 genomes]
rs7844862	0.98[ASN][1000 genomes]
rs9298050	0.85[ASN][1000 genomes]
rs9643526	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv465698	chr8:62036793-62179465	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611426	chr8:62036793-62179465	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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