Variant report

Variant	rs59933215
Chromosome Location	chr11:8862669-8862670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8854948..8856517-chr11:8861568..8863315,2	MCF-7	breast:
2	chr11:8850578..8853466-chr11:8861792..8863459,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs57375414	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8859400-8864000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:8859600-8863000	Enhancers	Fetal Muscle Leg	muscle
3	chr11:8859800-8863200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr11:8859800-8863800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:8860000-8862800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:8860000-8863200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:8860200-8862800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:8860200-8863400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:8860600-8863600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:8860600-8864400	Weak transcription	Osteobl	bone
11	chr11:8861000-8863200	Enhancers	Fetal Muscle Trunk	muscle
12	chr11:8861200-8863000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:8861600-8863200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:8862000-8863600	Enhancers	HepG2	liver
15	chr11:8862000-8864600	Weak transcription	NHDF-Ad	bronchial
16	chr11:8862200-8863000	Enhancers	Stomach Smooth Muscle	stomach
17	chr11:8862200-8863400	Weak transcription	Fetal Intestine Small	intestine
18	chr11:8862200-8881200	Weak transcription	Hela-S3	cervix
19	chr11:8862400-8863000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr11:8862400-8864800	Weak transcription	Fetal Stomach	stomach
21	chr11:8862400-8865000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:8862400-8865000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:8862400-8865000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:8862400-8865200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:8862400-8865200	Weak transcription	Pancreas	Pancrea
26	chr11:8862400-8867000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:8862400-8867800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr11:8862400-8867800	Weak transcription	Ovary	ovary
29	chr11:8862400-8868000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:8862400-8868000	Weak transcription	Left Ventricle	heart
31	chr11:8862400-8870600	Weak transcription	Placenta	Placenta
32	chr11:8862400-8874600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr11:8862400-8880000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:8862400-8880000	Weak transcription	Spleen	Spleen
35	chr11:8862400-8885000	Weak transcription	NHLF	lung
36	chr11:8862400-8888400	Weak transcription	Right Atrium	heart
37	chr11:8862600-8863000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:8862600-8863000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr11:8862600-8863400	Weak transcription	HUVEC	blood vessel
40	chr11:8862600-8864000	Weak transcription	Fetal Lung	lung
41	chr11:8862600-8864400	Weak transcription	A549	lung
42	chr11:8862600-8865200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:8862600-8866400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr11:8862600-8867000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:8862600-8867800	Weak transcription	Brain Substantia Nigra	brain
46	chr11:8862600-8868400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:8862600-8868800	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr11:8862600-8876600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:8862600-8885200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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