Variant report

Variant	rs57375414
Chromosome Location	chr11:8865210-8865211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56980703	1.00[AMR][1000 genomes]
rs58735631	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59314648	0.91[AFR][1000 genomes]
rs59619952	1.00[AMR][1000 genomes]
rs59933215	0.83[AFR][1000 genomes]
rs60631733	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61505319	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7129159	1.00[AMR][1000 genomes]
rs73408102	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8862200-8881200	Weak transcription	Hela-S3	cervix
2	chr11:8862400-8867000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:8862400-8867800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:8862400-8867800	Weak transcription	Ovary	ovary
5	chr11:8862400-8868000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:8862400-8868000	Weak transcription	Left Ventricle	heart
7	chr11:8862400-8870600	Weak transcription	Placenta	Placenta
8	chr11:8862400-8874600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:8862400-8880000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:8862400-8880000	Weak transcription	Spleen	Spleen
11	chr11:8862400-8885000	Weak transcription	NHLF	lung
12	chr11:8862400-8888400	Weak transcription	Right Atrium	heart
13	chr11:8862600-8866400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:8862600-8867000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:8862600-8867800	Weak transcription	Brain Substantia Nigra	brain
16	chr11:8862600-8868400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:8862600-8868800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:8862600-8876600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:8862600-8885200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:8862800-8865400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:8863000-8866400	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:8863200-8866400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:8863200-8867200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:8863200-8890400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr11:8863600-8866800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:8863600-8867000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr11:8864000-8872200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:8864000-8888000	Weak transcription	Fetal Intestine Small	intestine
29	chr11:8864800-8865800	Enhancers	Fetal Stomach	stomach
30	chr11:8864800-8865800	Enhancers	Stomach Smooth Muscle	stomach
31	chr11:8864800-8866000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:8865000-8865400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:8865000-8865400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:8865000-8865600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:8865000-8865600	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr11:8865200-8865400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:8865200-8865400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:8865200-8865400	Enhancers	Fetal Lung	lung
39	chr11:8865200-8865400	Enhancers	Pancreas	Pancrea

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