Variant report

Variant	rs73408102
Chromosome Location	chr11:8676288-8676289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8671281..8673032-chr11:8675425..8677604,2	K562	blood:
2	chr11:8674661..8677098-chr11:8702372..8704217,2	MCF-7	breast:
3	chr11:8666699..8668669-chr11:8675245..8676830,2	K562	blood:
4	chr11:8674907..8677648-chr11:8677971..8679721,2	K562	blood:
5	chr11:8671628..8674331-chr11:8674914..8677383,3	K562	blood:
6	chr11:8674451..8677275-chr11:8701396..8703424,3	K562	blood:
7	chr11:8675317..8677275-chr11:8701534..8703424,2	K562	blood:

Variant related genes	Relation type
ENSG00000166441	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56980703	1.00[AMR][1000 genomes]
rs57375414	1.00[AMR][1000 genomes]
rs58735631	1.00[AMR][1000 genomes]
rs59619952	1.00[AMR][1000 genomes]
rs60631733	1.00[AMR][1000 genomes]
rs61505319	1.00[AMR][1000 genomes]
rs73408033	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8637000-8703200	Weak transcription	Small Intestine	intestine
2	chr11:8655000-8676400	Strong transcription	Primary T cells from cord blood	blood
3	chr11:8662600-8680200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:8662600-8692000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:8663000-8680200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:8663200-8680000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:8663600-8676800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:8663800-8679800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:8664200-8692800	Weak transcription	K562	blood
10	chr11:8664200-8700400	Weak transcription	Stomach Mucosa	stomach
11	chr11:8664400-8679600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:8664800-8679200	Weak transcription	Fetal Brain Male	brain
13	chr11:8664800-8679800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:8665800-8692600	Weak transcription	Fetal Kidney	kidney
15	chr11:8667000-8677600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:8667600-8678000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:8668200-8692400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:8668400-8692400	Weak transcription	A549	lung
19	chr11:8669200-8683200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:8669400-8693000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr11:8669600-8679800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:8669800-8691800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr11:8670000-8677400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:8670000-8693400	Weak transcription	Colonic Mucosa	Colon
25	chr11:8670000-8693600	Weak transcription	Psoas Muscle	Psoas
26	chr11:8670200-8679600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:8670200-8679800	Weak transcription	Fetal Lung	lung
28	chr11:8670200-8692400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr11:8670200-8692800	Weak transcription	Left Ventricle	heart
30	chr11:8670200-8692800	Weak transcription	Ovary	ovary
31	chr11:8670200-8693200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr11:8670400-8680000	Weak transcription	Brain Hippocampus Middle	brain
33	chr11:8670400-8690400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:8670400-8693200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:8670600-8678200	Weak transcription	Adipose Nuclei	Adipose
36	chr11:8670600-8679400	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:8670600-8686400	Weak transcription	HepG2	liver
38	chr11:8670600-8692800	Weak transcription	Primary B cells from cord blood	blood
39	chr11:8671200-8691200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr11:8671200-8693200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr11:8671400-8680000	Weak transcription	Brain Substantia Nigra	brain
42	chr11:8671400-8684400	Weak transcription	Fetal Intestine Large	intestine
43	chr11:8671400-8692400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr11:8671600-8679400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:8671600-8679600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr11:8671600-8684400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:8671600-8690400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:8671600-8690400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr11:8671600-8692400	Weak transcription	Fetal Thymus	thymus
50	chr11:8671600-8692600	Weak transcription	Fetal Stomach	stomach

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