The 2.0 version of rSNPBase

Variant report

Variant rs5994430
Chromosome Location chr22:32204634-32204635
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:32150800-32212800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr22:32151000-32210800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr22:32151400-32217400 Weak transcription ES-I3 Cell Line embryonic stem cell
4 chr22:32159600-32207600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr22:32172200-32254400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
6 chr22:32172800-32221000 Strong transcription Fetal Adrenal Gland Adrenal Gland
7 chr22:32175200-32213800 Weak transcription iPS-15b Cell Line embryonic stem cell
8 chr22:32182200-32209800 Strong transcription Fetal Stomach stomach
9 chr22:32187800-32222000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr22:32188000-32220000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
11 chr22:32188600-32222600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr22:32188800-32210200 Strong transcription Fetal Intestine Small intestine
13 chr22:32188800-32214200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr22:32188800-32259600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
15 chr22:32189800-32225200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr22:32191600-32207800 Strong transcription Skeletal Muscle Female skeletal muscle
17 chr22:32191800-32208000 Strong transcription Rectal Mucosa Donor 31 rectum
18 chr22:32192200-32209600 Strong transcription Fetal Intestine Large intestine
19 chr22:32192400-32208200 Strong transcription Primary T cells from cord blood blood
20 chr22:32192400-32242200 Strong transcription Primary monocytes fromperipheralblood blood
21 chr22:32192400-32251000 Strong transcription Primary T helper cells fromperipheralblood blood
22 chr22:32192400-32266600 Strong transcription Monocytes-CD14+_RO01746 blood
23 chr22:32192800-32220000 Strong transcription Breast Myoepithelial Primary Cells Breast
24 chr22:32193000-32207800 Strong transcription Sigmoid Colon Sigmoid Colon
25 chr22:32193000-32208600 Strong transcription Primary T regulatory cells fromperipheralblood blood
26 chr22:32193000-32250600 Strong transcription Primary T cells fromperipheralblood blood
27 chr22:32193200-32205400 Strong transcription Spleen Spleen
28 chr22:32193200-32207800 Strong transcription Lung lung
29 chr22:32193200-32208000 Strong transcription Stomach Smooth Muscle stomach
30 chr22:32193200-32208000 Strong transcription Dnd41 blood
31 chr22:32193200-32208200 Strong transcription Fetal Brain Female brain
32 chr22:32193200-32208400 Strong transcription Thymus Thymus
33 chr22:32193200-32208600 Strong transcription Liver Liver
34 chr22:32193200-32209400 Strong transcription Duodenum Mucosa Duodenum
35 chr22:32193200-32226800 Strong transcription Fetal Muscle Trunk muscle
36 chr22:32193200-32228400 Strong transcription Adipose Nuclei Adipose
37 chr22:32193200-32246000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
38 chr22:32193200-32250600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr22:32193400-32208000 Strong transcription Ovary ovary
40 chr22:32193400-32220200 Strong transcription Primary B cells from peripheral blood blood
41 chr22:32196200-32205400 Strong transcription GM12878-XiMat blood
42 chr22:32196200-32208200 Strong transcription Cortex derived primary cultured neurospheres brain
43 chr22:32196600-32210800 Weak transcription NHLF lung
44 chr22:32196600-32224800 Weak transcription Hela-S3 cervix
45 chr22:32197200-32214400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr22:32197200-32251000 Strong transcription Primary B cells from cord blood blood
47 chr22:32197400-32219800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr22:32197800-32207800 Weak transcription Psoas Muscle Psoas
49 chr22:32198000-32209200 Weak transcription Pancreatic Islets Pancreatic Islet
50 chr22:32198600-32208200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015