Variant report

Variant	rs59948578
Chromosome Location	chr4:107498069-107498070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17036797	0.92[AFR][1000 genomes]
rs17036798	0.92[AFR][1000 genomes]
rs4339286	0.84[AFR][1000 genomes]
rs57241247	0.84[AFR][1000 genomes]
rs72877537	0.84[AFR][1000 genomes]
rs72877540	0.84[AFR][1000 genomes]
rs72877562	0.84[AFR][1000 genomes]
rs72883014	0.84[AFR][1000 genomes]
rs72883021	0.84[AFR][1000 genomes]
rs72883049	0.92[AFR][1000 genomes]
rs7676756	0.84[AFR][1000 genomes]
rs7681916	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879706	chr4:107477804-107546665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107491200-107503800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:107498000-107498400	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr4:107498000-107498600	Active TSS	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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