Variant report

Variant	rs72883049
Chromosome Location	chr4:107489433-107489434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17036797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17036798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2866896	1.00[AMR][1000 genomes]
rs4339286	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57241247	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59948578	0.92[AFR][1000 genomes]
rs72877537	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72877540	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72877562	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72883014	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72883021	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7676756	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7681916	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879706	chr4:107477804-107546665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107487200-107490000	Weak transcription	HMEC	breast
2	chr4:107487200-107490400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:107487400-107490000	Weak transcription	NH-A	brain
4	chr4:107487400-107490400	Weak transcription	NHEK	skin
5	chr4:107487800-107490400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:107488600-107490000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:107488600-107490000	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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