Variant report

Variant	rs59952325
Chromosome Location	chr6:34763420-34763421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34758609..34760887-chr6:34760994..34763673,2	MCF-7	breast:
2	chr6:34760758..34763688-chr6:34766501..34768387,2	MCF-7	breast:
3	chr6:34761569..34764046-chr6:35162032..35164160,2	K562	blood:

Variant related genes	Relation type
ENSG00000065060	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1125342	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16894102	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16894945	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16894995	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2236392	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2764199	0.81[ASN][1000 genomes]
rs2814965	0.88[ASN][1000 genomes]
rs3734260	0.85[ASN][1000 genomes]
rs3734263	0.86[ASN][1000 genomes]
rs3736896	0.91[ASN][1000 genomes]
rs3777751	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3798349	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3798351	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3800447	0.82[EUR][1000 genomes]
rs3800455	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3800456	0.82[ASN][1000 genomes]
rs41438444	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56825685	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56842618	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56987113	0.82[EUR][1000 genomes]
rs57338415	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57637041	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57645599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57916801	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58643640	0.82[EUR][1000 genomes]
rs58654146	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58817410	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58833137	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59014029	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59851773	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59884600	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60410089	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60439875	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60754257	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6939345	0.91[ASN][1000 genomes]
rs73413893	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73415706	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73415742	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73415758	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73415760	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73415779	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73415781	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73417752	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73417786	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73419615	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73419643	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73419650	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73419656	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73419658	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73419660	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73419689	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7752237	0.81[ASN][1000 genomes]
rs7772600	0.82[ASN][1000 genomes]
rs9296126	0.82[ASN][1000 genomes]
rs9380451	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv885795	chr6:34704613-34823187	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
11	nsv870010	chr6:34713359-34880048	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv1025374	chr6:34723723-34887316	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv462905	chr6:34728253-34886436	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv602906	chr6:34728253-34886436	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv1028363	chr6:34733071-34859045	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv885796	chr6:34739726-34823187	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
17	nsv1015792	chr6:34741917-34887316	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
18	nsv1021733	chr6:34751052-34887316	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
19	nsv970328	chr6:34760989-34774305	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34761000-34763600	Weak transcription	NHLF	lung
2	chr6:34761200-34763600	Weak transcription	HSMM	muscle
3	chr6:34761200-34764000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:34761200-34764400	Weak transcription	Lung	lung
5	chr6:34761200-34764400	Weak transcription	Small Intestine	intestine
6	chr6:34761400-34763600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:34761400-34763600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:34761400-34763600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:34761400-34763600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:34761400-34763600	Weak transcription	Left Ventricle	heart
11	chr6:34761400-34763600	Weak transcription	Right Ventricle	heart
12	chr6:34761400-34763600	Weak transcription	Stomach Mucosa	stomach
13	chr6:34761400-34763600	Weak transcription	HUVEC	blood vessel
14	chr6:34761400-34763600	Weak transcription	NH-A	brain
15	chr6:34761400-34763600	Weak transcription	Osteobl	bone
16	chr6:34761400-34763800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:34761400-34763800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:34761400-34764400	Weak transcription	Gastric	stomach
19	chr6:34761400-34765600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:34761400-34767400	Weak transcription	A549	lung
21	chr6:34761400-34767600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:34761400-34770200	Weak transcription	Fetal Intestine Small	intestine
23	chr6:34761400-34771000	Weak transcription	Fetal Thymus	thymus
24	chr6:34761400-34772800	Weak transcription	Psoas Muscle	Psoas
25	chr6:34761400-34774200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:34761400-34774600	Weak transcription	HSMMtube	muscle
27	chr6:34761400-34779200	Weak transcription	Primary B cells from peripheral blood	blood
28	chr6:34761400-34779600	Weak transcription	Right Atrium	heart
29	chr6:34761400-34784200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr6:34761400-34787200	Weak transcription	Fetal Muscle Leg	muscle
31	chr6:34761400-34789400	Weak transcription	Fetal Stomach	stomach
32	chr6:34761400-34789400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:34761400-34790800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr6:34761600-34763600	Weak transcription	Brain Angular Gyrus	brain
35	chr6:34761600-34763600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:34761600-34763600	Weak transcription	Fetal Heart	heart
37	chr6:34761600-34763600	Weak transcription	Fetal Intestine Large	intestine
38	chr6:34761600-34764000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:34761600-34764400	Enhancers	HepG2	liver
40	chr6:34761600-34764800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr6:34761600-34765800	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr6:34761600-34766800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:34761600-34772400	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr6:34761600-34774200	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr6:34761600-34784200	Weak transcription	Primary B cells from cord blood	blood
46	chr6:34761800-34771400	Weak transcription	Thymus	Thymus
47	chr6:34761800-34772000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:34761800-34784400	Weak transcription	Primary hematopoietic stem cells	blood
49	chr6:34761800-34784800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:34762000-34763600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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