Variant report

Variant	rs3800455
Chromosome Location	chr6:34683993-34683994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34683902..34686435-chr6:34695998..34698813,2	K562	blood:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1125342	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11970421	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12176092	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap]
rs16894102	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16894945	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.82[YRI][hapmap];0.88[EUR][1000 genomes]
rs16894995	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs16895362	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs16895467	0.88[CHB][hapmap];1.00[YRI][hapmap]
rs1964810	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2235571	0.80[ASN][1000 genomes]
rs2235572	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2236392	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2252551	1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs2744952	0.83[ASN][1000 genomes]
rs2744953	0.87[ASN][1000 genomes]
rs2744963	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs2744966	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs2744967	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2744968	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs2764199	0.84[CHB][hapmap];0.93[CHD][hapmap];0.84[ASN][1000 genomes]
rs2764200	0.83[ASN][1000 genomes]
rs2764202	0.80[ASN][1000 genomes]
rs2814950	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2814954	0.86[ASN][1000 genomes]
rs2814965	0.91[ASN][1000 genomes]
rs2814989	0.80[ASN][1000 genomes]
rs2814990	1.00[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs2814998	1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs2815000	0.81[ASN][1000 genomes]
rs2815003	1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs3734260	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs3734263	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs3736896	0.88[ASN][1000 genomes]
rs3777751	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3798349	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.82[YRI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3798351	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3800447	0.87[EUR][1000 genomes]
rs3800449	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap]
rs3800456	0.94[ASN][1000 genomes]
rs41438444	0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4615374	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4711399	0.84[ASN][1000 genomes]
rs4713823	0.85[ASN][1000 genomes]
rs56825685	0.88[EUR][1000 genomes]
rs56842618	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56987113	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57338415	0.88[EUR][1000 genomes]
rs57637041	0.88[EUR][1000 genomes]
rs57645599	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57916801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57994417	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58643640	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58654146	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58817410	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58833137	0.86[EUR][1000 genomes]
rs59014029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59851773	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59884600	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59952325	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60410089	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60439875	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60754257	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6906500	0.85[ASN][1000 genomes]
rs6932930	0.89[CHB][hapmap];0.93[CHD][hapmap];0.85[ASN][1000 genomes]
rs6939345	0.94[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs73413893	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73415706	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73415742	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73415758	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73415760	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73415779	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73415781	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73417752	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73417786	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73419615	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73419643	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73419650	0.90[EUR][1000 genomes]
rs73419656	0.88[EUR][1000 genomes]
rs73419658	0.88[EUR][1000 genomes]
rs73419660	0.88[EUR][1000 genomes]
rs73419689	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7739335	0.82[ASN][1000 genomes]
rs7751664	0.85[ASN][1000 genomes]
rs7752237	0.92[ASN][1000 genomes]
rs7772600	0.94[ASN][1000 genomes]
rs9296126	0.94[ASN][1000 genomes]
rs9357186	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap]
rs9366871	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs9368829	0.90[ASN][1000 genomes]
rs9380451	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2758046	chr6:34382492-34714677	Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2759418	chr6:34382492-34714677	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv830640	chr6:34542489-34714677	Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
12	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
13	nsv5255	chr6:34658569-34703563	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
14	nsv508401	chr6:34669708-34710302	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34678000-34686800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:34678000-34686800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:34682400-34684400	Enhancers	A549	lung
4	chr6:34682800-34684800	Weak transcription	K562	blood
5	chr6:34683400-34685200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:34683400-34686200	Enhancers	NHEK	skin
7	chr6:34683400-34686600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:34683800-34688000	Weak transcription	Stomach Mucosa	stomach

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