Variant report

Variant	rs59957224
Chromosome Location	chr14:25437431-25437432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17109419	0.85[AFR][1000 genomes]
rs17109431	0.82[AFR][1000 genomes]
rs17185453	0.93[EUR][1000 genomes]
rs17185509	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17257668	0.90[EUR][1000 genomes]
rs17257752	0.80[ASN][1000 genomes]
rs1886054	0.98[ASN][1000 genomes]
rs1886055	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58764839	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59366121	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60667968	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60783613	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1041051	chr14:25388230-25480511	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25424600-25460600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:25430000-25465800	Weak transcription	Lung	lung
3	chr14:25433000-25439200	Enhancers	Fetal Intestine Small	intestine
4	chr14:25435000-25438400	Enhancers	Fetal Intestine Large	intestine
5	chr14:25435200-25438000	Weak transcription	Esophagus	oesophagus
6	chr14:25435200-25439000	Weak transcription	Aorta	Aorta
7	chr14:25435800-25440400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr14:25435800-25443600	Weak transcription	Right Atrium	heart
9	chr14:25435800-25443800	Weak transcription	Fetal Brain Female	brain
10	chr14:25435800-25447400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr14:25436000-25443400	Weak transcription	Fetal Lung	lung
12	chr14:25436200-25440200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr14:25436200-25441200	Weak transcription	Brain Substantia Nigra	brain
14	chr14:25436200-25441400	Weak transcription	HepG2	liver
15	chr14:25436200-25443200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:25436200-25447000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr14:25436200-25448000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr14:25436200-25451200	Weak transcription	A549	lung
19	chr14:25436400-25437800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr14:25436400-25438000	Weak transcription	Fetal Heart	heart
21	chr14:25436400-25439600	Weak transcription	Fetal Brain Male	brain
22	chr14:25436400-25440400	Weak transcription	Colon Smooth Muscle	Colon
23	chr14:25436400-25441200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr14:25436400-25441400	Weak transcription	Brain Anterior Caudate	brain
25	chr14:25436400-25443400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:25436400-25443400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr14:25436400-25443600	Weak transcription	Left Ventricle	heart
28	chr14:25436600-25438000	Weak transcription	Brain Angular Gyrus	brain
29	chr14:25436600-25440400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr14:25436600-25440600	Weak transcription	HSMMtube	muscle
31	chr14:25436600-25441400	Weak transcription	HSMM	muscle
32	chr14:25436600-25454200	Weak transcription	Fetal Muscle Leg	muscle
33	chr14:25436600-25454400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr14:25436600-25455400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr14:25436800-25440000	Weak transcription	Brain Hippocampus Middle	brain
36	chr14:25436800-25440400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr14:25436800-25442000	Weak transcription	Pancreas	Pancrea
38	chr14:25436800-25451200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr14:25437200-25440000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr14:25437200-25448000	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links