Variant report

Variant	rs60783613
Chromosome Location	chr14:25495701-25495702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10483294	0.81[ASN][1000 genomes]
rs11623931	0.82[ASN][1000 genomes]
rs11628356	0.83[ASN][1000 genomes]
rs17185509	0.87[ASN][1000 genomes]
rs17185593	0.87[ASN][1000 genomes]
rs17185705	0.81[ASN][1000 genomes]
rs17257752	0.95[ASN][1000 genomes]
rs17257808	0.87[ASN][1000 genomes]
rs17257836	0.85[ASN][1000 genomes]
rs1886054	0.85[ASN][1000 genomes]
rs1952504	0.83[ASN][1000 genomes]
rs2007289	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58640442	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58764839	0.86[ASN][1000 genomes]
rs59366121	0.86[ASN][1000 genomes]
rs59957224	0.85[ASN][1000 genomes]
rs60667968	0.87[ASN][1000 genomes]
rs61254962	0.85[ASN][1000 genomes]
rs61502598	0.81[ASN][1000 genomes]
rs7159074	0.84[ASN][1000 genomes]
rs9743589	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv901510	chr14:25476170-25526309	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25479400-25508600	Weak transcription	Brain Anterior Caudate	brain
2	chr14:25479800-25501000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:25481200-25507400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:25485200-25501600	Weak transcription	Fetal Intestine Small	intestine
5	chr14:25488000-25505000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr14:25490400-25499400	Weak transcription	Left Ventricle	heart
7	chr14:25490600-25501400	Weak transcription	Pancreas	Pancrea
8	chr14:25492200-25500400	Weak transcription	HepG2	liver
9	chr14:25492400-25517600	Weak transcription	Psoas Muscle	Psoas
10	chr14:25494800-25495800	Enhancers	Stomach Mucosa	stomach
11	chr14:25495400-25507400	Weak transcription	Fetal Lung	lung
12	chr14:25495600-25496600	Enhancers	GM12878-XiMat	blood
13	chr14:25495600-25499400	Weak transcription	Right Ventricle	heart

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