Variant report
| Variant | rs17257808 |
|---|---|
| Chromosome Location | chr14:25531605-25531606 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10483294 | 0.94[ASN][1000 genomes] |
| rs11623931 | 0.95[ASN][1000 genomes] |
| rs11628356 | 0.96[ASN][1000 genomes] |
| rs17185509 | 0.92[JPT][hapmap] |
| rs17185593 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17185677 | 0.93[ASN][1000 genomes] |
| rs17185684 | 0.93[ASN][1000 genomes] |
| rs17185691 | 0.93[ASN][1000 genomes] |
| rs17185705 | 0.94[ASN][1000 genomes] |
| rs17257752 | 0.92[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs17257836 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17257871 | 0.93[ASN][1000 genomes] |
| rs17257878 | 0.93[ASN][1000 genomes] |
| rs17257885 | 0.93[ASN][1000 genomes] |
| rs17257892 | 0.93[ASN][1000 genomes] |
| rs1886054 | 0.92[JPT][hapmap] |
| rs1952504 | 0.96[ASN][1000 genomes] |
| rs1958389 | 0.93[ASN][1000 genomes] |
| rs2007289 | 0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs58640442 | 0.87[ASN][1000 genomes] |
| rs60783613 | 0.87[ASN][1000 genomes] |
| rs61254962 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs61502598 | 0.94[ASN][1000 genomes] |
| rs7148029 | 0.93[ASN][1000 genomes] |
| rs7159074 | 0.97[ASN][1000 genomes] |
| rs74039209 | 0.89[ASN][1000 genomes] |
| rs9743589 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv901504 | chr14:25184210-25646203 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv901509 | chr14:25398571-25743484 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv901511 | chr14:25505085-25588029 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:25521600-25534400 | Weak transcription | Pancreas | Pancrea |
