Variant report

Variant	rs17257878
Chromosome Location	chr14:25563875-25563876
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10483294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11623931	0.88[ASN][1000 genomes]
rs11628356	0.89[ASN][1000 genomes]
rs17185453	1.00[YRI][hapmap]
rs17185509	0.92[JPT][hapmap]
rs17185593	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17185677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17185684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17185691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17185698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17185705	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17257752	0.92[JPT][hapmap]
rs17257808	0.93[ASN][1000 genomes]
rs17257836	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17257871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17257885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17257892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886054	0.92[JPT][hapmap]
rs1952504	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1958389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2007289	0.88[ASN][1000 genomes]
rs58640442	0.82[ASN][1000 genomes]
rs61254962	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61502598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7148029	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7159074	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74039209	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9743589	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3490801	chr14:25560793-25675699	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3490802	chr14:25560793-25675699	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25559600-25564200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr14:25560400-25565000	Weak transcription	Stomach Mucosa	stomach
3	chr14:25560600-25564600	Weak transcription	Fetal Intestine Large	intestine
4	chr14:25560600-25565000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:25560600-25565000	Weak transcription	Fetal Heart	heart
6	chr14:25561400-25564600	Weak transcription	Fetal Intestine Small	intestine
7	chr14:25561800-25565200	Weak transcription	Pancreas	Pancrea
8	chr14:25562400-25564000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr14:25562400-25564200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:25562600-25565600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr14:25563000-25564000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:25563000-25564000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:25563000-25564000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr14:25563200-25564000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr14:25563200-25565000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:25563400-25564400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr14:25563600-25564000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr14:25563600-25564000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:25563600-25564000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr14:25563600-25564400	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr14:25563600-25565800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:25563800-25564000	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr14:25563800-25564000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr14:25563800-25564000	Enhancers	Gastric	stomach
25	chr14:25563800-25565800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links