Variant report

Variant	rs1952504
Chromosome Location	chr14:25560188-25560189
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10483294	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11623931	0.92[ASN][1000 genomes]
rs11628356	0.93[ASN][1000 genomes]
rs17185453	1.00[YRI][hapmap]
rs17185509	0.92[JPT][hapmap]
rs17185593	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17185677	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17185684	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17185691	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17185698	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17185705	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17257752	0.92[JPT][hapmap]
rs17257808	0.96[ASN][1000 genomes]
rs17257836	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17257871	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17257878	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17257885	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17257892	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1886054	0.92[JPT][hapmap]
rs1958389	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2007289	0.91[ASN][1000 genomes]
rs58640442	0.83[ASN][1000 genomes]
rs60783613	0.83[ASN][1000 genomes]
rs61254962	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61502598	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7148029	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7159074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs74039209	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9743589	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25547000-25561600	Weak transcription	Pancreas	Pancrea
2	chr14:25558200-25560400	Enhancers	Placenta Amnion	Placenta Amnion
3	chr14:25558200-25563600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr14:25558600-25561800	Enhancers	HSMM	muscle
5	chr14:25558800-25560600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:25559000-25560200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr14:25559400-25560800	Enhancers	Osteobl	bone
8	chr14:25559600-25560800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:25559600-25560800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:25559600-25561000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:25559600-25561000	Enhancers	HSMMtube	muscle
12	chr14:25559600-25561800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr14:25559600-25564200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr14:25559800-25560400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:25559800-25560600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr14:25559800-25560600	Enhancers	NH-A	brain
17	chr14:25560000-25560200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr14:25560000-25560200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:25560000-25560400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:25560000-25560400	Enhancers	Stomach Mucosa	stomach
21	chr14:25560000-25560600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr14:25560000-25560600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr14:25560000-25560600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr14:25560000-25560600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr14:25560000-25560600	Enhancers	Fetal Intestine Large	intestine
26	chr14:25560000-25560600	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr14:25560000-25560800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:25560000-25560800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:25560000-25561400	Enhancers	Fetal Intestine Small	intestine

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