Variant report

Variant	rs74039209
Chromosome Location	chr14:25581429-25581430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10483294	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11623931	0.85[ASN][1000 genomes]
rs11628356	0.86[ASN][1000 genomes]
rs17185593	0.89[ASN][1000 genomes]
rs17185677	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17185684	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17185691	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17185698	0.80[EUR][1000 genomes]
rs17185705	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17257808	0.89[ASN][1000 genomes]
rs17257836	0.88[ASN][1000 genomes]
rs17257871	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17257878	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17257885	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17257892	0.96[ASN][1000 genomes]
rs1952504	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1958389	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2007289	0.84[ASN][1000 genomes]
rs61254962	0.88[ASN][1000 genomes]
rs61502598	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7148029	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7159074	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9743589	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3490801	chr14:25560793-25675699	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3490802	chr14:25560793-25675699	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25577800-25582600	Enhancers	Placenta Amnion	Placenta Amnion
2	chr14:25578400-25583400	Weak transcription	Psoas Muscle	Psoas
3	chr14:25578600-25582000	Weak transcription	Stomach Mucosa	stomach
4	chr14:25578600-25583600	Weak transcription	Gastric	stomach
5	chr14:25579400-25582600	Weak transcription	Fetal Intestine Small	intestine
6	chr14:25580600-25583000	Active TSS	Right Atrium	heart
7	chr14:25580800-25586200	Weak transcription	Fetal Intestine Large	intestine
8	chr14:25581000-25581800	Enhancers	HSMM	muscle
9	chr14:25581000-25589600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr14:25581200-25582400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:25581200-25586000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr14:25581200-25586000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr14:25581200-25586600	Weak transcription	Fetal Heart	heart
14	chr14:25581200-25586600	Weak transcription	HSMMtube	muscle
15	chr14:25581200-25588200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:25581200-25588600	Weak transcription	Left Ventricle	heart
17	chr14:25581200-25589000	Weak transcription	NHDF-Ad	bronchial
18	chr14:25581400-25589400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:25581400-25589600	Weak transcription	Osteobl	bone
20	chr14:25581400-25590600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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