Variant report

Variant	rs59957537
Chromosome Location	chr8:69944263-69944264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69938259..69942128-chr8:69942869..69947061,5	MCF-7	breast:
2	chr8:69865725..69868693-chr8:69943801..69946153,2	MCF-7	breast:
3	chr8:69942123..69945264-chr8:69951482..69954001,3	MCF-7	breast:
4	chr8:69942324..69944829-chr8:70400082..70401628,2	MCF-7	breast:
5	chr8:69762730..69767388-chr8:69943367..69946598,5	MCF-7	breast:
6	chr8:69763017..69766748-chr8:69941633..69945462,3	MCF-7	breast:
7	chr8:69739790..69742259-chr8:69942663..69944315,2	MCF-7	breast:
8	chr8:69942113..69944489-chr8:70020530..70022071,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16935371	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58410344	0.90[EUR][1000 genomes]
rs61667694	0.92[EUR][1000 genomes]
rs62514733	0.89[EUR][1000 genomes]
rs62514734	0.90[EUR][1000 genomes]
rs62514736	0.90[EUR][1000 genomes]
rs62514738	0.92[EUR][1000 genomes]
rs62514740	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69941000-69951600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:69941800-69946000	Weak transcription	Aorta	Aorta
3	chr8:69942000-69947200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:69942600-69947800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:69942800-69948000	Enhancers	Osteobl	bone
6	chr8:69943000-69944600	Genic enhancers	HSMM	muscle
7	chr8:69943000-69945800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:69943200-69944600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:69943200-69944600	Enhancers	NHDF-Ad	bronchial
10	chr8:69943200-69945400	Weak transcription	Fetal Stomach	stomach
11	chr8:69943200-69945800	Weak transcription	Colon Smooth Muscle	Colon
12	chr8:69943800-69945600	Weak transcription	Fetal Lung	lung
13	chr8:69943800-69946000	Weak transcription	NHLF	lung
14	chr8:69944000-69944600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr8:69944000-69944600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:69944000-69944600	Enhancers	NH-A	brain
17	chr8:69944000-69945400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:69944000-69953600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:69944200-69945800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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