Variant report

Variant	rs61667694
Chromosome Location	chr8:69917896-69917897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16935371	0.80[EUR][1000 genomes]
rs4327872	0.91[ASN][1000 genomes]
rs58410344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59957537	0.92[EUR][1000 genomes]
rs62514732	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62514733	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62514736	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514738	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62514740	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73282701	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv33049	chr8:69836813-69943360	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69906400-69928400	Weak transcription	HSMM	muscle
2	chr8:69908600-69920400	Weak transcription	Osteobl	bone
3	chr8:69914200-69919200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:69916200-69918000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:69916200-69918200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr8:69916200-69918200	Enhancers	Fetal Brain Male	brain
7	chr8:69916200-69919200	Enhancers	Brain Germinal Matrix	brain
8	chr8:69916400-69918200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:69916400-69918200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr8:69916600-69918200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr8:69916600-69920000	Enhancers	Fetal Brain Female	brain
12	chr8:69917400-69920600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:69917800-69918200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:69917800-69918200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr8:69917800-69918200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr8:69917800-69918200	Enhancers	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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