Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10040516	0.89[AFR][1000 genomes]
rs10042563	0.84[AFR][1000 genomes]
rs10043066	0.89[AFR][1000 genomes]
rs10045444	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10052077	0.89[AFR][1000 genomes]
rs10065616	0.88[AFR][1000 genomes]
rs10076131	0.89[AFR][1000 genomes]
rs1080858	0.89[AFR][1000 genomes]
rs1132528	0.83[AMR][1000 genomes]
rs11957650	0.85[AMR][1000 genomes]
rs1593953	0.82[EUR][1000 genomes]
rs2162847	0.89[AFR][1000 genomes]
rs2303717	0.83[AMR][1000 genomes]
rs4705831	0.83[AMR][1000 genomes]
rs4705833	0.88[AFR][1000 genomes]
rs56030143	0.88[AFR][1000 genomes]
rs66534827	0.86[AMR][1000 genomes]
rs6878282	0.88[AFR][1000 genomes]
rs6878900	0.89[AFR][1000 genomes]
rs754573	0.89[AFR][1000 genomes]
rs9552	0.80[AMR][1000 genomes]
rs9885084	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9885245	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	esv2763910	chr5:112916398-112951827	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv1031336	chr5:112916398-112956588	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv4961	chr5:112945908-112991152	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv882725	chr5:112947050-112989901	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112948200-112951000	Weak transcription	Ovary	ovary
2	chr5:112948200-112952800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:112948800-112952800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:112950000-112951600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:112950800-112951800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr5:112950800-112952000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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