Variant report
| Variant | rs1593953 |
|---|---|
| Chromosome Location | chr5:112832433-112832434 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10045444 | 0.83[EUR][1000 genomes] |
| rs1035408 | 0.85[AMR][1000 genomes] |
| rs164251 | 0.86[AMR][1000 genomes] |
| rs164253 | 0.82[AMR][1000 genomes] |
| rs171181 | 0.90[AMR][1000 genomes] |
| rs1820056 | 0.80[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs182987 | 0.93[AMR][1000 genomes] |
| rs190453 | 0.86[AMR][1000 genomes] |
| rs2431548 | 0.93[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2434664 | 0.90[AMR][1000 genomes] |
| rs2434665 | 0.88[AMR][1000 genomes] |
| rs27700 | 0.86[AMR][1000 genomes] |
| rs34075952 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs348927 | 0.84[AMR][1000 genomes] |
| rs348933 | 0.93[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs348949 | 0.90[AMR][1000 genomes] |
| rs348950 | 0.90[AMR][1000 genomes] |
| rs348953 | 0.90[AMR][1000 genomes] |
| rs348959 | 0.84[AMR][1000 genomes] |
| rs3857437 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3906371 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs406288 | 0.87[AMR][1000 genomes] |
| rs423089 | 0.90[AMR][1000 genomes] |
| rs4324667 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs459428 | 0.88[AMR][1000 genomes] |
| rs461034 | 0.85[AMR][1000 genomes] |
| rs463216 | 0.87[AMR][1000 genomes] |
| rs465898 | 0.88[AMR][1000 genomes] |
| rs59958489 | 0.82[EUR][1000 genomes] |
| rs675353 | 0.90[AMR][1000 genomes] |
| rs7713348 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7727449 | 0.84[ASN][1000 genomes] |
| rs7730802 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9686772 | 0.80[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv599396 | chr5:112408944-112853189 | Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:112827200-112840400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
