Variant report

Variant	rs9686772
Chromosome Location	chr5:112803261-112803262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1035408	0.84[AMR][1000 genomes]
rs1517208	0.84[EUR][1000 genomes]
rs1517210	0.84[EUR][1000 genomes]
rs154039	0.81[EUR][1000 genomes]
rs154040	0.83[EUR][1000 genomes]
rs1593953	0.80[AMR][1000 genomes]
rs164251	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs164253	0.85[AMR][1000 genomes]
rs171181	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs182987	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs190453	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2431548	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2434664	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2434665	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs255856	0.82[EUR][1000 genomes]
rs255858	0.84[EUR][1000 genomes]
rs255863	0.82[EUR][1000 genomes]
rs255874	0.82[EUR][1000 genomes]
rs26960	0.82[EUR][1000 genomes]
rs27566	0.84[EUR][1000 genomes]
rs27700	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs348927	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs348933	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs348949	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs348950	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs348953	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs348959	0.82[AMR][1000 genomes]
rs36612	0.85[EUR][1000 genomes]
rs3857435	0.81[EUR][1000 genomes]
rs406288	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs423089	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs459428	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs461034	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs463216	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs465898	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6594711	0.82[EUR][1000 genomes]
rs675353	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7702120	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112786200-112810000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:112788000-112808000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:112788200-112807600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:112794800-112810000	Weak transcription	NHEK	skin
5	chr5:112801800-112806800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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