Variant report

Variant	rs461034
Chromosome Location	chr5:112798498-112798499
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10037429	0.88[YRI][hapmap]
rs10042223	0.87[CHB][hapmap]
rs10051834	0.87[CHB][hapmap]
rs10067046	0.93[JPT][hapmap]
rs10071966	0.92[CEU][hapmap]
rs10072511	0.87[JPT][hapmap]
rs10074214	0.86[CHB][hapmap]
rs10076501	0.86[JPT][hapmap]
rs1035408	0.87[AMR][1000 genomes]
rs1038918	0.87[JPT][hapmap]
rs10900684	0.86[JPT][hapmap]
rs11241200	0.86[JPT][hapmap]
rs1132528	0.96[CEU][hapmap];0.86[JPT][hapmap]
rs11744710	0.88[YRI][hapmap]
rs11744737	0.84[YRI][hapmap]
rs11948072	0.85[JPT][hapmap]
rs11948187	0.88[YRI][hapmap]
rs11948437	0.89[YRI][hapmap]
rs11948446	1.00[YRI][hapmap]
rs11949669	0.89[YRI][hapmap]
rs11950791	0.94[YRI][hapmap]
rs11953906	0.94[YRI][hapmap]
rs11954798	0.88[YRI][hapmap]
rs11955591	1.00[YRI][hapmap]
rs12659978	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs13153071	0.86[JPT][hapmap]
rs13161610	1.00[YRI][hapmap]
rs13161969	1.00[YRI][hapmap]
rs13188946	0.86[CHB][hapmap]
rs1517206	0.87[JPT][hapmap]
rs1517208	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1517210	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs154039	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs154040	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1593953	0.85[AMR][1000 genomes]
rs164251	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs164252	0.84[YRI][hapmap]
rs164253	0.90[AMR][1000 genomes]
rs171181	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs173903	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1820056	0.96[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs182987	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs182988	0.94[YRI][hapmap]
rs1838207	0.87[CHB][hapmap]
rs1845290	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs190453	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2222144	0.87[CHB][hapmap]
rs2303717	0.83[CEU][hapmap]
rs2416310	0.87[JPT][hapmap]
rs2431548	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2434664	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2434665	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs255856	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs255858	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs255863	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs255867	0.82[EUR][1000 genomes]
rs255874	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs26960	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs26961	0.80[CHB][hapmap]
rs26983	0.82[AMR][1000 genomes]
rs26985	0.86[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs26987	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs26988	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs27566	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs27567	0.86[CHB][hapmap]
rs27700	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2910018	0.96[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs2914152	1.00[YRI][hapmap]
rs348927	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs348933	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs348949	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs348950	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs348953	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs348959	0.87[AMR][1000 genomes]
rs36612	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3763139	0.92[CEU][hapmap];0.87[JPT][hapmap]
rs3763141	1.00[YRI][hapmap]
rs3857435	0.88[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3936062	0.96[CEU][hapmap]
rs406288	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs423089	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4331889	0.87[CHB][hapmap]
rs4398627	0.93[CHB][hapmap];0.83[YRI][hapmap]
rs4415069	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs4438867	0.80[EUR][1000 genomes]
rs459428	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs463216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4639215	0.96[CEU][hapmap]
rs465898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs466564	0.86[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4705812	0.86[JPT][hapmap]
rs4705813	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4705830	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs4705831	0.96[CEU][hapmap];0.87[JPT][hapmap]
rs57617774	0.80[EUR][1000 genomes]
rs6594700	0.93[JPT][hapmap]
rs6594701	0.84[CHB][hapmap]
rs6594704	0.87[CHB][hapmap]
rs6594705	0.87[CHB][hapmap]
rs6594710	0.86[CHB][hapmap]
rs6594711	0.89[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6594712	0.87[CHB][hapmap]
rs6594736	0.80[EUR][1000 genomes]
rs675353	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6867397	0.86[CHB][hapmap]
rs6868141	0.81[CHB][hapmap]
rs6869097	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs6873400	0.86[JPT][hapmap]
rs6875238	0.82[ASN][1000 genomes]
rs6881976	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs6894434	0.87[JPT][hapmap]
rs7702120	0.88[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7708084	0.87[CHB][hapmap]
rs7713378	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs7717422	0.80[CHB][hapmap]
rs7722276	0.86[CHB][hapmap]
rs7725589	0.87[CHB][hapmap]
rs7727449	0.86[CHB][hapmap]
rs7729214	0.93[YRI][hapmap]
rs7731164	1.00[YRI][hapmap]
rs7731465	0.86[CHB][hapmap]
rs7735247	0.86[JPT][hapmap]
rs9326886	0.80[CHB][hapmap]
rs9326888	0.80[CHB][hapmap]
rs9326895	0.96[CEU][hapmap]
rs9552	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs9686772	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112786200-112810000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:112788000-112808000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:112788200-112807600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:112794800-112810000	Weak transcription	NHEK	skin

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