Variant report

Variant	rs13161610
Chromosome Location	chr5:112865521-112865522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112857449..112860235-chr5:112863616..112865733,2	K562	blood:
2	chr5:112858735..112860300-chr5:112863925..112865733,2	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10037429	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10072577	1.00[ASN][1000 genomes]
rs1035409	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10519354	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs11739848	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11744710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11744737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11745445	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11746529	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11746565	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11747062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948187	0.88[YRI][hapmap]
rs11948437	0.89[YRI][hapmap]
rs11948446	1.00[YRI][hapmap]
rs11949669	0.89[YRI][hapmap]
rs11950791	0.94[YRI][hapmap]
rs11953034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953906	0.94[YRI][hapmap]
rs11955591	1.00[YRI][hapmap]
rs13153791	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160021	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13161969	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13162970	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs13166822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13167659	1.00[ASN][1000 genomes]
rs13170908	0.91[ASN][1000 genomes]
rs13171273	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171389	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13172774	1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13180262	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13182359	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs1318772	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13187776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164252	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs17326496	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17327139	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17332053	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17333442	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs182988	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs255857	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26965	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26980	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26982	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26984	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs26989	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26990	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2860483	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2910017	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2914151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2914152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34158516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34161832	0.85[AFR][1000 genomes]
rs34554590	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34870059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348921	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348922	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348923	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs348934	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35077609	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35274088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35364742	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36611	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs36613	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3763141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs414475	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs419483	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs421515	0.82[ASN][1000 genomes]
rs4398627	0.83[YRI][hapmap]
rs4410636	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs446272	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs458055	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs461034	1.00[YRI][hapmap]
rs4705554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58479323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59007160	0.81[AFR][1000 genomes]
rs59757131	0.86[AFR][1000 genomes]
rs6594727	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66838021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67382821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67881502	0.91[ASN][1000 genomes]
rs68131815	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71577453	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703186	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7705255	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7729214	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs7731164	1.00[YRI][hapmap]
rs7736165	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882720	chr5:112859994-112911165	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv969205	chr5:112860167-112867961	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112850400-112866600	Weak transcription	Esophagus	oesophagus
2	chr5:112850400-112866600	Weak transcription	Placenta	Placenta
3	chr5:112850400-112866800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:112850400-112866800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:112850400-112866800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:112850400-112866800	Weak transcription	Aorta	Aorta
7	chr5:112850400-112866800	Weak transcription	Lung	lung
8	chr5:112850400-112867000	Weak transcription	Pancreas	Pancrea
9	chr5:112850400-112879000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:112850400-112879200	Weak transcription	Gastric	stomach
11	chr5:112850400-112904000	Weak transcription	Psoas Muscle	Psoas
12	chr5:112850600-112865600	Weak transcription	Fetal Kidney	kidney
13	chr5:112850600-112866600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr5:112850600-112866600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr5:112850600-112867600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr5:112850600-112868600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr5:112850600-112874800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr5:112850600-112879200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:112850600-112908400	Weak transcription	Colonic Mucosa	Colon
20	chr5:112851400-112866800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:112851400-112879000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr5:112851600-112866600	Weak transcription	Small Intestine	intestine
23	chr5:112851600-112866800	Weak transcription	NHLF	lung
24	chr5:112851600-112893200	Weak transcription	Fetal Brain Male	brain
25	chr5:112851600-112902800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr5:112851800-112866800	Weak transcription	NH-A	brain
27	chr5:112852200-112866600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr5:112852400-112866000	Weak transcription	Adipose Nuclei	Adipose
29	chr5:112852400-112866600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr5:112852400-112878800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr5:112852400-112882200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr5:112852400-112882200	Weak transcription	Fetal Heart	heart
33	chr5:112853200-112882400	Weak transcription	Brain Angular Gyrus	brain
34	chr5:112853400-112865600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr5:112853600-112866600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr5:112854200-112866800	Weak transcription	Fetal Stomach	stomach
37	chr5:112854800-112866200	Weak transcription	Fetal Lung	lung
38	chr5:112855600-112866600	Weak transcription	HSMMtube	muscle
39	chr5:112856600-112865600	Weak transcription	K562	blood
40	chr5:112856600-112866000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr5:112856600-112866600	Weak transcription	Ovary	ovary
42	chr5:112856600-112867800	Weak transcription	HMEC	breast
43	chr5:112856800-112865600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr5:112856800-112865800	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr5:112856800-112866600	Weak transcription	Brain Germinal Matrix	brain
46	chr5:112856800-112866600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr5:112856800-112866600	Weak transcription	Fetal Muscle Leg	muscle
48	chr5:112856800-112866800	Weak transcription	Fetal Brain Female	brain
49	chr5:112856800-112866800	Weak transcription	Left Ventricle	heart
50	chr5:112857000-112865600	Weak transcription	Fetal Intestine Large	intestine

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