Variant report

Variant	rs164252
Chromosome Location	chr5:112791801-112791802
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10036300	1.00[YRI][hapmap]
rs10037429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs1035409	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10519348	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10519354	1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs11241202	0.93[EUR][1000 genomes]
rs11738347	0.91[EUR][1000 genomes]
rs11738587	0.93[EUR][1000 genomes]
rs11739509	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs11744710	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11744737	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs11746828	0.89[EUR][1000 genomes]
rs11747062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs11748646	0.85[EUR][1000 genomes]
rs11750254	0.89[EUR][1000 genomes]
rs11948446	0.85[YRI][hapmap]
rs11953034	0.83[AMR][1000 genomes]
rs11955591	0.85[YRI][hapmap]
rs13161610	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs13161969	0.86[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs13162970	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs13166822	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13172774	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13177178	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13182359	1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs1318772	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs13187776	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17325908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17326496	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17327139	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs17332053	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs182988	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs185336	0.91[EUR][1000 genomes]
rs2545359	0.83[EUR][1000 genomes]
rs2545360	0.83[EUR][1000 genomes]
rs255857	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs255859	0.95[EUR][1000 genomes]
rs255870	0.91[EUR][1000 genomes]
rs255871	0.95[EUR][1000 genomes]
rs26962	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs26965	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs26980	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs26982	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs26984	1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs26986	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs26989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs26990	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2860483	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2914151	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2914152	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs34158516	0.83[AMR][1000 genomes]
rs34361144	0.95[EUR][1000 genomes]
rs34539248	0.91[EUR][1000 genomes]
rs34625553	0.89[EUR][1000 genomes]
rs34870059	0.83[AMR][1000 genomes]
rs348919	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs348935	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs348939	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35111059	0.93[EUR][1000 genomes]
rs35274088	0.83[AMR][1000 genomes]
rs35451724	0.91[EUR][1000 genomes]
rs35568473	0.91[EUR][1000 genomes]
rs36611	1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs36613	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs3763141	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs414475	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs421515	0.95[EUR][1000 genomes]
rs4398627	1.00[YRI][hapmap]
rs446272	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs458055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs461034	0.84[YRI][hapmap]
rs4705554	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4705829	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs58479323	0.83[AMR][1000 genomes]
rs66629800	0.89[EUR][1000 genomes]
rs66838021	0.83[AMR][1000 genomes]
rs67344014	0.91[EUR][1000 genomes]
rs67382821	0.83[AMR][1000 genomes]
rs67767339	0.89[EUR][1000 genomes]
rs67894881	0.80[EUR][1000 genomes]
rs68189049	0.91[EUR][1000 genomes]
rs6861939	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs71577443	0.83[EUR][1000 genomes]
rs72797916	0.91[EUR][1000 genomes]
rs7703186	0.83[AMR][1000 genomes]
rs7727449	0.92[YRI][hapmap]
rs7731164	0.84[YRI][hapmap]
rs7736165	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112786200-112810000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:112788000-112794200	Weak transcription	NHEK	skin
3	chr5:112788000-112808000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:112788200-112807600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:112790800-112792800	Weak transcription	Lung	lung
6	chr5:112791200-112795200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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