Variant report

Variant rs348939
Chromosome Location chr5:112824737-112824738
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:112822800-112824800 Bivalent/Poised TSS HUES48 Cell Line embryonic stem cell
2 chr5:112822800-112825000 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
3 chr5:112822800-112825200 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
4 chr5:112823000-112824800 Bivalent/Poised TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr5:112823000-112824800 Flanking Bivalent TSS/Enh Skeletal Muscle Male skeletal muscle
6 chr5:112823000-112825000 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
7 chr5:112823000-112825000 Bivalent/Poised TSS H1 Cell Line embryonic stem cell
8 chr5:112823000-112825000 Bivalent Enhancer Primary hematopoietic stem cells short term culture blood
9 chr5:112823000-112825000 Active TSS Fetal Kidney kidney
10 chr5:112823000-112825000 Active TSS Pancreatic Islets Pancreatic Islet
11 chr5:112823000-112825200 Active TSS Aorta Aorta
12 chr5:112823200-112824800 Flanking Bivalent TSS/Enh Primary T regulatory cells fromperipheralblood blood
13 chr5:112823200-112824800 Flanking Bivalent TSS/Enh Colonic Mucosa Colon
14 chr5:112823200-112825200 Active TSS Breast Myoepithelial Primary Cells Breast
15 chr5:112823400-112824800 Active TSS H9 Cell Line embryonic stem cell
16 chr5:112823400-112824800 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
17 chr5:112823400-112824800 Active TSS Brain Substantia Nigra brain
18 chr5:112823400-112824800 Flanking Bivalent TSS/Enh Monocytes-CD14+_RO01746 blood
19 chr5:112823400-112825000 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
20 chr5:112823400-112825000 Bivalent/Poised TSS Duodenum Smooth Muscle Duodenum
21 chr5:112823400-112825400 Bivalent Enhancer Primary neutrophils fromperipheralblood blood
22 chr5:112823400-112825600 Active TSS Brain Anterior Caudate brain
23 chr5:112823600-112824800 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr5:112823600-112825000 Bivalent/Poised TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr5:112823800-112824800 Bivalent Enhancer Primary hematopoietic stem cells blood
26 chr5:112823800-112824800 Active TSS Fetal Lung lung
27 chr5:112823800-112825600 Bivalent Enhancer Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr5:112823800-112826800 Bivalent/Poised TSS Primary T cells from cord blood blood
29 chr5:112824000-112824800 Bivalent Enhancer Primary B cells from peripheral blood blood
30 chr5:112824000-112824800 ZNF genes & repeats Spleen Spleen
31 chr5:112824000-112825400 Bivalent Enhancer Primary Natural Killer cells fromperipheralblood blood
32 chr5:112824200-112824800 Flanking Bivalent TSS/Enh Primary T helper naive cells fromperipheralblood blood
33 chr5:112824200-112824800 Flanking Bivalent TSS/Enh Primary T helper 17 cells PMA-I stimulated --
34 chr5:112824200-112824800 Flanking Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
35 chr5:112824200-112824800 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
36 chr5:112824200-112824800 Flanking Bivalent TSS/Enh Adipose Nuclei Adipose
37 chr5:112824200-112824800 Flanking Bivalent TSS/Enh Brain Germinal Matrix brain
38 chr5:112824200-112824800 Flanking Bivalent TSS/Enh Fetal Muscle Trunk muscle
39 chr5:112824200-112824800 Flanking Bivalent TSS/Enh Fetal Muscle Leg muscle
40 chr5:112824200-112824800 Flanking Bivalent TSS/Enh Placenta Placenta
41 chr5:112824200-112824800 Flanking Bivalent TSS/Enh Skeletal Muscle Female skeletal muscle
42 chr5:112824200-112824800 Flanking Active TSS Stomach Smooth Muscle stomach
43 chr5:112824200-112824800 Flanking Active TSS HUVEC blood vessel
44 chr5:112824200-112825200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr5:112824200-112825200 Flanking Active TSS Muscle Satellite Cultured Cells --
46 chr5:112824200-112825600 Flanking Active TSS NH-A brain
47 chr5:112824400-112824800 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
48 chr5:112824400-112824800 Flanking Active TSS IMR90 fetal lung fibroblasts Cell Line lung
49 chr5:112824400-112824800 Flanking Active TSS ES-UCSF4 Cell Line embryonic stem cell
50 chr5:112824400-112824800 Flanking Bivalent TSS/Enh Primary T helper naive cells from peripheral blood blood

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