Variant report

Variant	rs11746565
Chromosome Location	chr5:112934273-112934274
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112672794..112674511-chr5:112933592..112935108,2	MCF-7	breast:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10036300	0.89[YRI][hapmap]
rs10037429	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10072577	0.91[ASN][1000 genomes]
rs1035409	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11739848	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11744710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11744737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745445	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11746529	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11747062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11950791	0.84[YRI][hapmap]
rs11953034	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11955591	0.90[YRI][hapmap]
rs13153791	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13160021	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13161969	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13166822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13167659	0.91[ASN][1000 genomes]
rs13170908	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171273	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13171389	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13172774	1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13180262	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13187776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs164252	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17332053	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17333442	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs182988	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs255857	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26965	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26980	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26982	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26984	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs26989	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26990	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2860483	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2910017	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2914151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2914152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34158516	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34554590	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34870059	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs348921	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs348922	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs348923	0.82[EUR][1000 genomes]
rs348934	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs348935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs348939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35077609	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35274088	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35364742	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36611	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs36613	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3763141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs414475	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs419483	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4398627	0.94[YRI][hapmap]
rs4410636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs446272	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs458055	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs461034	0.89[YRI][hapmap]
rs4705554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4705829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58479323	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6594727	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66838021	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67382821	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67881502	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68131815	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71577453	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7703186	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7705255	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7727449	0.89[YRI][hapmap]
rs7736165	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1033202	chr5:112891857-112945992	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv520674	chr5:112911165-112942820	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	esv2752057	chr5:112916398-112945992	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv1029507	chr5:112916398-112945992	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	esv2763910	chr5:112916398-112951827	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
7	nsv1031336	chr5:112916398-112956588	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112904600-112934800	Weak transcription	Psoas Muscle	Psoas
2	chr5:112908800-112935200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:112910600-112935200	Weak transcription	Spleen	Spleen
4	chr5:112910600-112935400	Weak transcription	Colon Smooth Muscle	Colon
5	chr5:112910600-112936600	Weak transcription	Colonic Mucosa	Colon
6	chr5:112910600-112942000	Weak transcription	Brain Substantia Nigra	brain
7	chr5:112910800-112934600	Weak transcription	Gastric	stomach
8	chr5:112910800-112935000	Weak transcription	Pancreas	Pancrea
9	chr5:112910800-112935200	Weak transcription	Esophagus	oesophagus
10	chr5:112910800-112937400	Weak transcription	Fetal Intestine Small	intestine
11	chr5:112910800-112938200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:112910800-112942200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:112916800-112936000	Weak transcription	Fetal Heart	heart
14	chr5:112917200-112942000	Weak transcription	K562	blood
15	chr5:112917400-112937600	Weak transcription	HSMMtube	muscle
16	chr5:112918000-112939000	Weak transcription	NHEK	skin
17	chr5:112920400-112939000	Weak transcription	HMEC	breast
18	chr5:112920600-112934600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr5:112920600-112934800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr5:112920600-112936000	Weak transcription	Brain Anterior Caudate	brain
21	chr5:112920800-112938600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr5:112920800-112942000	Weak transcription	Ovary	ovary
23	chr5:112927000-112936600	Weak transcription	Fetal Muscle Leg	muscle
24	chr5:112927200-112941800	Weak transcription	HUVEC	blood vessel
25	chr5:112927800-112934800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr5:112927800-112939200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr5:112928200-112936600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr5:112928800-112937800	Weak transcription	Osteobl	bone
29	chr5:112929000-112934400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr5:112929200-112935000	Weak transcription	Fetal Intestine Large	intestine
31	chr5:112929200-112935400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr5:112929200-112941400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr5:112929600-112934400	Weak transcription	Fetal Thymus	thymus
34	chr5:112929800-112936000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr5:112929800-112942000	Weak transcription	NH-A	brain
36	chr5:112929800-112943800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr5:112930000-112937600	Weak transcription	Primary B cells from cord blood	blood
38	chr5:112930000-112941800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr5:112930000-112941800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr5:112930000-112942000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr5:112930000-112942200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr5:112930000-112943800	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr5:112930000-112944000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr5:112930200-112934400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr5:112930200-112934600	Weak transcription	Adipose Nuclei	Adipose
46	chr5:112930200-112934800	Weak transcription	Primary T cells from cord blood	blood
47	chr5:112930200-112942000	Weak transcription	Left Ventricle	heart
48	chr5:112930200-112944000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr5:112930400-112935000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr5:112930400-112942000	Weak transcription	A549	lung

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