Variant report

Variant	rs13187776
Chromosome Location	chr5:112910850-112910851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10037429	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10072577	1.00[ASN][1000 genomes]
rs1035409	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11739848	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11744710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11744737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11745445	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11746529	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11746565	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11747062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953034	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13153791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160021	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13161610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161969	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13162970	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs13166822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13167659	1.00[ASN][1000 genomes]
rs13170908	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13171273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171389	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13172774	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13180262	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13182359	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs1318772	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs164252	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17332053	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17333442	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs182988	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs255857	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26962	1.00[CEU][hapmap]
rs26965	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26980	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26982	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26984	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs26989	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26990	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2860483	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2910017	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2914151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2914152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34158516	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34554590	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34870059	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348921	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348922	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348923	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs348934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35077609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35274088	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35364742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36611	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs36613	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3763141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs414475	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs419483	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs421515	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4410636	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs446272	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs458055	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4705554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58479323	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6594727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66838021	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67382821	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67881502	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68131815	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71577453	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703186	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7705255	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7736165	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882720	chr5:112859994-112911165	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv882723	chr5:112868878-112911165	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv882724	chr5:112868878-112933202	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv1033202	chr5:112891857-112945992	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112867400-112926000	Weak transcription	Small Intestine	intestine
2	chr5:112867400-112933000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:112868600-112911400	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr5:112870200-112930800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr5:112872000-112915000	Weak transcription	Hela-S3	cervix
6	chr5:112876000-112918800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:112886600-112911200	Strong transcription	Primary B cells from peripheral blood	blood
8	chr5:112889400-112930600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:112890600-112915800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr5:112891600-112912600	Weak transcription	Stomach Mucosa	stomach
11	chr5:112892800-112915000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:112894400-112911800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr5:112895000-112911400	Strong transcription	Dnd41	blood
14	chr5:112898200-112921200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:112899400-112929400	Weak transcription	HepG2	liver
16	chr5:112900400-112915800	Weak transcription	HUVEC	blood vessel
17	chr5:112901000-112911000	Strong transcription	Fetal Lung	lung
18	chr5:112901000-112911800	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr5:112901400-112911600	Strong transcription	Adipose Nuclei	Adipose
20	chr5:112901800-112911400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr5:112902200-112911600	Strong transcription	Primary B cells from cord blood	blood
22	chr5:112903000-112917000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr5:112904400-112917200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr5:112904600-112934800	Weak transcription	Psoas Muscle	Psoas
25	chr5:112904800-112916200	Weak transcription	Fetal Heart	heart
26	chr5:112906400-112911400	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr5:112906800-112911400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr5:112907200-112915600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr5:112907400-112915600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr5:112907400-112932000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr5:112908400-112911400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr5:112908600-112911000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr5:112908600-112911400	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr5:112908800-112911400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr5:112908800-112916000	Weak transcription	Fetal Brain Male	brain
36	chr5:112908800-112935200	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr5:112909000-112911800	Strong transcription	Primary T cells from cord blood	blood
38	chr5:112909200-112911200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:112909200-112911400	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr5:112909200-112912000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr5:112909400-112911000	Strong transcription	Placenta Amnion	Placenta Amnion
42	chr5:112909400-112911200	Strong transcription	Brain Germinal Matrix	brain
43	chr5:112909400-112911400	Strong transcription	Fetal Muscle Leg	muscle
44	chr5:112909400-112911400	Strong transcription	Fetal Thymus	thymus
45	chr5:112909400-112912200	Strong transcription	Liver	Liver
46	chr5:112909600-112911000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr5:112909600-112911600	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr5:112909600-112915600	Weak transcription	Fetal Kidney	kidney
49	chr5:112909800-112911000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr5:112909800-112911000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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