Variant report

Variant	rs348923
Chromosome Location	chr5:112836838-112836839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10037429	0.85[CEU][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10072577	0.83[ASN][1000 genomes]
rs1035409	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10519354	0.92[CEU][hapmap]
rs11739509	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs11739848	0.81[EUR][1000 genomes]
rs11744710	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs11744737	1.00[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs11745445	0.83[EUR][1000 genomes]
rs11746529	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11746565	0.82[EUR][1000 genomes]
rs11747062	1.00[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11953034	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13153791	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13160021	0.87[AFR][1000 genomes]
rs13161610	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13161969	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13162970	0.92[CEU][hapmap];0.85[JPT][hapmap]
rs13166822	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13167659	0.83[ASN][1000 genomes]
rs13171273	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13171389	0.81[EUR][1000 genomes]
rs13172774	0.87[AFR][1000 genomes]
rs13180262	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13182359	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs1318772	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs13187776	1.00[CEU][hapmap];0.82[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17325908	0.85[JPT][hapmap]
rs17326496	0.82[JPT][hapmap]
rs17327139	0.92[CEU][hapmap];0.85[JPT][hapmap];0.87[AFR][1000 genomes]
rs17332053	0.91[CEU][hapmap];0.82[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17333442	0.81[EUR][1000 genomes]
rs182988	0.92[CEU][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs255857	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs26962	1.00[CEU][hapmap]
rs26965	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs26980	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs26982	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs26984	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs26989	0.91[CEU][hapmap];0.85[JPT][hapmap]
rs26990	0.82[JPT][hapmap]
rs2860483	0.92[CEU][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2910017	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2914151	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2914152	1.00[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34158516	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34554590	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34870059	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs348919	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348934	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348935	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348939	1.00[CEU][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35077609	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35274088	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35364742	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36611	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs36613	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs3763141	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes]
rs414475	0.92[CEU][hapmap];0.82[JPT][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs419483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs421515	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs446272	0.92[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs458055	0.92[CEU][hapmap];0.82[JPT][hapmap];0.87[AFR][1000 genomes]
rs4705554	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4705829	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58479323	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6594727	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66838021	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67382821	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67881502	0.87[AFR][1000 genomes]
rs68131815	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71577453	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7703186	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7705255	0.81[EUR][1000 genomes]
rs7736165	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv3369949	chr5:112836779-112837356	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112827200-112840400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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