The 2.0 version of rSNPBase

Variant report

Variant rs13167659
Chromosome Location chr5:112866920-112866921
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:112850400-112867000 Weak transcription Pancreas Pancrea
2 chr5:112850400-112879000 Weak transcription Placenta Amnion Placenta Amnion
3 chr5:112850400-112879200 Weak transcription Gastric stomach
4 chr5:112850400-112904000 Weak transcription Psoas Muscle Psoas
5 chr5:112850600-112867600 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr5:112850600-112868600 Weak transcription Skeletal Muscle Female skeletal muscle
7 chr5:112850600-112874800 Weak transcription Stomach Smooth Muscle stomach
8 chr5:112850600-112879200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr5:112850600-112908400 Weak transcription Colonic Mucosa Colon
10 chr5:112851400-112879000 Weak transcription Brain Cingulate Gyrus brain
11 chr5:112851600-112893200 Weak transcription Fetal Brain Male brain
12 chr5:112851600-112902800 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr5:112852400-112878800 Weak transcription Brain Inferior Temporal Lobe brain
14 chr5:112852400-112882200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr5:112852400-112882200 Weak transcription Fetal Heart heart
16 chr5:112853200-112882400 Weak transcription Brain Angular Gyrus brain
17 chr5:112856600-112867800 Weak transcription HMEC breast
18 chr5:112857000-112877600 Weak transcription HepG2 liver
19 chr5:112858800-112876000 Weak transcription Brain Anterior Caudate brain
20 chr5:112858800-112882000 Weak transcription Brain Substantia Nigra brain
21 chr5:112858800-112882200 Weak transcription Rectal Smooth Muscle rectum
22 chr5:112860400-112879000 Weak transcription Brain Hippocampus Middle brain
23 chr5:112860400-112882200 Weak transcription Colon Smooth Muscle Colon
24 chr5:112861000-112869800 Weak transcription Primary T killer memory cells from peripheral blood blood
25 chr5:112861400-112868600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
26 chr5:112861800-112869800 Weak transcription Primary T helper naive cells from peripheral blood blood
27 chr5:112862000-112867200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
28 chr5:112862800-112891200 Weak transcription iPS-15b Cell Line embryonic stem cell
29 chr5:112864200-112882200 Weak transcription Stomach Mucosa stomach
30 chr5:112864400-112869600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr5:112864800-112868000 ZNF genes & repeats Dnd41 blood
32 chr5:112865200-112867000 Weak transcription Hela-S3 cervix
33 chr5:112865200-112868800 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
34 chr5:112865400-112867200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr5:112865400-112867400 ZNF genes & repeats H1 Cell Line embryonic stem cell
36 chr5:112865600-112867200 Strong transcription Fetal Kidney kidney
37 chr5:112865600-112867200 Strong transcription K562 blood
38 chr5:112865600-112867600 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
39 chr5:112865600-112867800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr5:112865600-112868000 ZNF genes & repeats Primary T cells from cord blood blood
41 chr5:112865600-112868800 ZNF genes & repeats GM12878-XiMat blood
42 chr5:112865600-112869000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr5:112865800-112867400 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
44 chr5:112865800-112867400 ZNF genes & repeats Fetal Intestine Large intestine
45 chr5:112866000-112867000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr5:112866000-112868200 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
47 chr5:112866000-112878000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr5:112866200-112867000 ZNF genes & repeats Osteobl bone
49 chr5:112866200-112867400 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr5:112866200-112868000 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015