Variant report

Variant	rs11739848
Chromosome Location	chr5:112948757-112948758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10036300	0.94[YRI][hapmap]
rs10037429	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10072577	0.91[ASN][1000 genomes]
rs1035409	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11744710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11744737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745445	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11746529	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11746565	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11747062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11953034	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11955591	0.84[YRI][hapmap]
rs13153791	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13160021	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13161969	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13166822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13167659	0.91[ASN][1000 genomes]
rs13170908	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171273	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13171389	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13172774	1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13180262	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13187776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs164252	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17332053	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17333442	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs182988	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs26980	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26982	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26984	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs26989	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26990	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2860483	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2910017	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2914151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2914152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34158516	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34554590	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34870059	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs348921	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs348922	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs348923	0.81[EUR][1000 genomes]
rs348934	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs348935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs348939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35077609	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35274088	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35364742	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36611	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs36613	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3763141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs414475	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs419483	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4398627	1.00[YRI][hapmap]
rs4410636	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs446272	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs458055	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs461034	0.84[YRI][hapmap]
rs4705554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4705829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58479323	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6594727	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66838021	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67382821	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67881502	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68131815	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71577453	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7703186	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7705255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7727449	0.94[YRI][hapmap]
rs7736165	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	esv2763910	chr5:112916398-112951827	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv1031336	chr5:112916398-112956588	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv4961	chr5:112945908-112991152	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv882725	chr5:112947050-112989901	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112944200-112949000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:112944400-112950000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:112944400-112950000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:112948000-112949000	Enhancers	Fetal Heart	heart
5	chr5:112948000-112949200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:112948200-112951000	Weak transcription	Ovary	ovary
7	chr5:112948200-112952800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:112948400-112949400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:112948400-112949400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:112948400-112949600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr5:112948400-112949600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:112948400-112949600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:112948600-112948800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr5:112948600-112949200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr5:112948600-112949800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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