Variant report

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10042223	0.93[CHB][hapmap]
rs10051834	0.93[CHB][hapmap]
rs10074214	0.92[CHB][hapmap]
rs13154300	0.85[CEU][hapmap]
rs13180516	0.89[CEU][hapmap]
rs13181732	0.85[CEU][hapmap]
rs13188946	0.92[CHB][hapmap]
rs13354840	0.90[YRI][hapmap]
rs1366393	0.86[CHB][hapmap]
rs17327964	0.85[CEU][hapmap]
rs1850407	0.86[CHB][hapmap]
rs1850412	0.86[CHB][hapmap]
rs2222144	0.93[CHB][hapmap]
rs26959	0.85[CHB][hapmap]
rs26961	0.86[CHB][hapmap]
rs26966	0.86[CHB][hapmap]
rs27567	0.92[CHB][hapmap]
rs4331889	0.93[CHB][hapmap]
rs4438866	0.81[CEU][hapmap]
rs461034	0.81[CHB][hapmap]
rs6594701	1.00[CHB][hapmap]
rs6594704	0.93[CHB][hapmap]
rs6594705	0.93[CHB][hapmap]
rs6594710	0.92[CHB][hapmap]
rs6594712	0.93[CHB][hapmap]
rs6867397	0.92[CHB][hapmap]
rs6868148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876848	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6880552	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6883102	0.85[CEU][hapmap]
rs6887914	0.86[CEU][hapmap]
rs6894687	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7705430	0.85[YRI][hapmap]
rs7708084	0.93[CHB][hapmap]
rs7715884	0.81[YRI][hapmap]
rs7717422	0.86[CHB][hapmap]
rs7725589	0.93[CHB][hapmap]
rs7731465	0.92[CHB][hapmap]
rs9326886	0.86[CHB][hapmap]
rs9326887	0.86[CHB][hapmap]
rs9326888	0.86[CHB][hapmap]
rs9687632	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv882719	chr5:112568212-112706511	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv949165	chr5:112615626-112730216	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112667200-112693400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:112682000-112700000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:112688800-112690200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:112689000-112693200	Weak transcription	Left Ventricle	heart
5	chr5:112689200-112690000	Enhancers	Fetal Heart	heart
6	chr5:112689400-112690000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:112689400-112690200	Enhancers	HMEC	breast
8	chr5:112689600-112690200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:112689600-112690200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:112689800-112690000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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